Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E1J55_RS05410 Genome accession   NZ_CP037903
Coordinates   1105602..1106117 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain LHM10-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1100602..1111117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1J55_RS05365 csrA 1101325..1101510 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  E1J55_RS05395 yqaB 1102832..1103398 (+) 567 WP_000273292.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  E1J55_RS05400 yqaA 1103395..1103823 (+) 429 WP_001287454.1 YqaA family protein -
  E1J55_RS05405 gshA 1103896..1105452 (+) 1557 WP_032218630.1 glutamate--cysteine ligase -
  E1J55_RS05410 luxS 1105602..1106117 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  E1J55_RS05415 emrB 1106181..1107719 (-) 1539 WP_001817020.1 multidrug efflux MFS transporter permease subunit EmrB -
  E1J55_RS05420 emrA 1107736..1108908 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  E1J55_RS05425 emrR 1109035..1109565 (-) 531 WP_000378435.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  E1J55_RS05430 ygaH 1109656..1109991 (-) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  E1J55_RS05435 ygaZ 1109981..1110718 (-) 738 WP_000445661.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=308585 E1J55_RS05410 WP_001130211.1 1105602..1106117(+) (luxS) [Escherichia coli strain LHM10-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=308585 E1J55_RS05410 WP_001130211.1 1105602..1106117(+) (luxS) [Escherichia coli strain LHM10-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAGCTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment