Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E1J55_RS00405 Genome accession   NZ_CP037903
Coordinates   80721..81389 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain LHM10-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 75721..86389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1J55_RS00375 yicC 75740..76603 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  E1J55_RS00380 rph 76730..77446 (+) 717 WP_001247093.1 ribonuclease PH -
  E1J55_RS00385 pyrE 77512..78153 (+) 642 WP_000806154.1 orotate phosphoribosyltransferase -
  E1J55_RS00390 slmA 78190..78786 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  E1J55_RS00395 dut 78893..79351 (-) 459 WP_000976070.1 dUTP diphosphatase -
  E1J55_RS00400 coaBC 79329..80549 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  E1J55_RS00405 radC 80721..81389 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  E1J55_RS00410 rpmB 81606..81842 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  E1J55_RS00415 rpmG 81863..82030 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  E1J55_RS00420 mutM 82128..82937 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  E1J55_RS00425 coaD 82976..83455 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  E1J55_RS00430 waaA 83463..84740 (-) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  E1J55_RS00435 rfaQ 85153..86211 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=308564 E1J55_RS00405 WP_001297375.1 80721..81389(+) (radC) [Escherichia coli strain LHM10-1]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=308564 E1J55_RS00405 WP_001297375.1 80721..81389(+) (radC) [Escherichia coli strain LHM10-1]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment