Detailed information NTG0308552

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: E1A98_RS20060
• Genome accession: NZ_CP037857
• Coordinates: 4113021..4114046 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli BW25113 strain AM187
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4108021..4119046

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E1A98_RS20030 (E1A98_20035)	zapB	4108105..4108350 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
E1A98_RS20035 (E1A98_20040)	rraA	4108435..4108920 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
E1A98_RS20040 (E1A98_20045)	menA	4109013..4109939 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
E1A98_RS20045 (E1A98_20050)	hslU	4110006..4111337 (-)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
E1A98_RS20050 (E1A98_20055)	hslV	4111347..4111877 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
E1A98_RS20055 (E1A98_20060)	ftsN	4111970..4112929 (-)	960	WP_000068828.1	cell division protein FtsN	-
E1A98_RS20060 (E1A98_20065)	cytR	4113021..4114046 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
E1A98_RS20065 (E1A98_20070)	priA	4114202..4116400 (-)	2199	WP_001301269.1	primosomal protein N'	Machinery gene
E1A98_RS20070 (E1A98_20075)	rpmE	4116603..4116815 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
E1A98_RS20075 (E1A98_20080)	yiiX	4116876..4117484 (-)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
E1A98_RS20080 (E1A98_20085)	metJ	4117668..4117985 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=308552 E1A98_RS20060 WP_000644904.1 4113021..4114046(-) (cytR) [Escherichia coli BW25113 strain AM187]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=308552 E1A98_RS20060 WP_000644904.1 4113021..4114046(-) (cytR) [Escherichia coli BW25113 strain AM187]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628