Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E1A98_RS18570 Genome accession   NZ_CP037857
Coordinates   3804913..3805581 (-) Length   222 a.a.
NCBI ID   WP_001350561.1    Uniprot ID   B1X972
Organism   Escherichia coli BW25113 strain AM187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3799913..3810581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1A98_RS18540 (E1A98_18560) rfaQ 3800086..3801156 (-) 1071 WP_001350560.1 lipopolysaccharide core heptosyltransferase RfaQ -
  E1A98_RS18545 (E1A98_18565) waaA 3801562..3802839 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  E1A98_RS18550 (E1A98_18570) coaD 3802847..3803326 (+) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  E1A98_RS18555 (E1A98_18575) mutM 3803365..3804174 (-) 810 WP_001114543.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  E1A98_RS18560 (E1A98_18580) rpmG 3804272..3804439 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  E1A98_RS18565 (E1A98_18585) rpmB 3804460..3804696 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  E1A98_RS18570 (E1A98_18590) radC 3804913..3805581 (-) 669 WP_001350561.1 RadC family protein Machinery gene
  E1A98_RS18575 (E1A98_18595) coaBC 3805753..3806973 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  E1A98_RS18580 (E1A98_18600) dut 3806951..3807409 (+) 459 WP_000976073.1 dUTP diphosphatase -
  E1A98_RS18585 (E1A98_18605) slmA 3807516..3808112 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  E1A98_RS18590 (E1A98_18610) pyrE 3808149..3808790 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  E1A98_RS18595 (E1A98_18615) rph 3808856..3809571 (-) 716 Protein_3645 ribonuclease PH -
  E1A98_RS18600 (E1A98_18620) yicC 3809698..3810561 (+) 864 WP_000621340.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25343.46 Da        Isoelectric Point: 8.4958

>NTDB_id=308539 E1A98_RS18570 WP_001350561.1 3804913..3805581(-) (radC) [Escherichia coli BW25113 strain AM187]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHRRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=308539 E1A98_RS18570 WP_001350561.1 3804913..3805581(-) (radC) [Escherichia coli BW25113 strain AM187]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACCGGG
TTATAACGCATAGGCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1X972

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment