Detailed information NTG0308521

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: E1A98_RS14040
• Genome accession: NZ_CP037857
• Coordinates: 2859580..2860572 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli BW25113 strain AM187
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2854580..2865572

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E1A98_RS14020 (E1A98_14040)	otnK	2855356..2856522 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
E1A98_RS14025 (E1A98_14045)	ygbL	2856614..2857252 (+)	639	WP_001278994.1	aldolase	-
E1A98_RS14030 (E1A98_14050)	ygbM	2857257..2858033 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
E1A98_RS14035 (E1A98_14055)	ygbN	2858122..2859486 (+)	1365	WP_000104441.1	GntP family transporter	-
E1A98_RS14040 (E1A98_14060)	rpoS	2859580..2860572 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
E1A98_RS14045 (E1A98_14065)	nlpD	2860635..2861729 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
E1A98_RS14050 (E1A98_14070)	pcm	2861914..2862540 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
E1A98_RS14055 (E1A98_14075)	surE	2862534..2863295 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
E1A98_RS14060 (E1A98_14080)	truD	2863276..2864325 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
E1A98_RS14065 (E1A98_14085)	ispF	2864322..2864801 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
E1A98_RS14070 (E1A98_14090)	ispD	2864801..2865511 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=308521 E1A98_RS14040 WP_000081588.1 2859580..2860572(-) (rpoS) [Escherichia coli BW25113 strain AM187]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=308521 E1A98_RS14040 WP_000081588.1 2859580..2860572(-) (rpoS) [Escherichia coli BW25113 strain AM187]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715