Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E1A98_RS13580 Genome accession   NZ_CP037857
Coordinates   2769407..2769889 (+) Length   160 a.a.
NCBI ID   WP_001407480.1    Uniprot ID   P52140
Organism   Escherichia coli BW25113 strain AM187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2764407..2774889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1A98_RS13555 - 2765023..2765175 (-) 153 Protein_2660 glutaredoxin domain-containing protein -
  E1A98_RS13560 (E1A98_13570) - 2765188..2766203 (-) 1016 Protein_2661 arsenic transporter -
  E1A98_RS13565 (E1A98_13575) yfjW 2766339..2768042 (+) 1704 WP_000896263.1 protein YfjW -
  E1A98_RS13570 (E1A98_13580) - 2768677..2768837 (+) 161 Protein_2663 DUF905 family protein -
  E1A98_RS13575 (E1A98_13585) lfgA 2768940..2769398 (+) 459 WP_000211841.1 antirestriction protein -
  E1A98_RS13580 (E1A98_13590) radC 2769407..2769889 (+) 483 WP_001407480.1 RadC family protein Machinery gene
  E1A98_RS13585 (E1A98_13595) ypjJ 2769898..2770098 (+) 201 WP_001395452.1 DUF987 domain-containing protein -
  E1A98_RS13590 (E1A98_13600) yfjZ 2770136..2770453 (+) 318 WP_000072690.1 type IV toxin-antitoxin system YeeU family antitoxin -
  E1A98_RS13595 (E1A98_13605) ypjF 2770474..2770803 (+) 330 WP_001094400.1 type IV toxin-antitoxin system toxin YpjF -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17963.75 Da        Isoelectric Point: 8.6079

>NTDB_id=308517 E1A98_RS13580 WP_001407480.1 2769407..2769889(+) (radC) [Escherichia coli BW25113 strain AM187]
MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFA
GSISSTEVHPREVVKRALYFNAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 483 bp        

>NTDB_id=308517 E1A98_RS13580 WP_001407480.1 2769407..2769889(+) (radC) [Escherichia coli BW25113 strain AM187]
ATGATGGAACAGTCACTCATCCCACAGACACCGGTACTTCCACTGACCGCACAACGCACGGTAAAACGCGCCTTAACGCT
GCTTGACCGACACCTGCGCGAAACAGGCGTGGCATTCACCTCCACTCAGGCTGCTCGTGACTGGCTGAAGCTGAAAATGG
CGGGGCTGGAGCGTGAAGAATTTATGATGCTGTATCTGAACCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCC
GGTTCTATTAGCAGTACCGAGGTACATCCCCGTGAGGTGGTCAAACGCGCCCTGTATTTCAATGCAGCAGCAGTGATACT
GGCGCATAACCACCCCTCCGGCGACACTACTCCCAGCCAGGCAGATAAGACTATAACGCAGCGTCTGGTGCAGGCGCTTC
AGCTCGTTGATATCCGTGTCCCTGACCATCTGATTGTTGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTT
TGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(40-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52140

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65

0.375