Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NT05HA_RS08990 Genome accession   NC_012913
Coordinates   1923345..1925342 (+) Length   665 a.a.
NCBI ID   WP_012771875.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus NJ8700     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1918345..1930342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT05HA_RS08985 (NT05HA_1936) tal 1922258..1923211 (+) 954 WP_005702343.1 transaldolase -
  NT05HA_RS08990 (NT05HA_1937) recP/tkt 1923345..1925342 (+) 1998 WP_012771875.1 transketolase Machinery gene
  NT05HA_RS08995 (NT05HA_1938) - 1925517..1925870 (+) 354 WP_005702345.1 c-type lysozyme inhibitor -
  NT05HA_RS09000 (NT05HA_1939) - 1925944..1926333 (-) 390 WP_012771876.1 RidA family protein -
  NT05HA_RS09005 (NT05HA_1940) recX 1926417..1926875 (-) 459 WP_005702347.1 recombination regulator RecX -
  NT05HA_RS09010 (NT05HA_1941) recA 1926954..1928015 (-) 1062 WP_005702349.1 recombinase RecA Machinery gene
  NT05HA_RS09015 (NT05HA_1942) - 1928150..1930075 (-) 1926 WP_012771877.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 72825.49 Da        Isoelectric Point: 6.0628

>NTDB_id=30851 NT05HA_RS08990 WP_012771875.1 1923345..1925342(+) (recP/tkt) [Aggregatibacter aphrophilus NJ8700]
MSNRQQLANAIRFLSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLHHNPTNPQWANRDRFVLSNGHGSMLIYSLLHLSGY
DVSIEDLKQFRQLHSKTPGHPEFGYTPGVETTTGPLGQGITNAVGMAIAEKTLAGQFNRDGHNIVDHYTYAFLGDGCLME
GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTQKRFEAYGWQVIPAIDGHNPAQIIEAIKQAQAETNKPTL
IICKTIIGFGSPNKSNSHDCHGAPLGDEEIALTRKALNWDYAPFDIPADVYAQWDAKAKGAELEKAWHEKFAAYAKAYPE
LAAEFTRRMEKHLPADWAKESQAFIEHLQANPASIASRKASQNAIEAYAKVLPELLGGSADLASSNLTLWSGSKPIRATQ
NVDGNYLNYGVREFGMAAIMNGIALHGGFIPYGATFLMFMEYAHNAIRMASLMKQRSLFVFTHDSIGLGEDGPTHQPVEQ
TAALRLIPNLETWRPCDQVESAIAWKAAIERTDGPSALIFTRQNLLQMDRTSEQLANVARGAYVLKDCAGTPELIFIATG
SEVELAVKAAEQLTAEGKKIRVVSMPSTNVFDKQDEAYRESVLPAAVTKRVAIEAGISDVWYKYVGFSGRIVGMNSFGES
APADQLFKLFGFTVDNVVAKAKEIL

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=30851 NT05HA_RS08990 WP_012771875.1 1923345..1925342(+) (recP/tkt) [Aggregatibacter aphrophilus NJ8700]
ATGTCTAATCGTCAACAACTCGCTAATGCAATCCGTTTTTTAAGCATGGATGCCGTACAAAAAGCCAAATCCGGTCACCC
GGGTGCACCGATGGGAATGGCGGATATCGCTGAAGTGTTATGGCGTGATTTCCTGCACCATAACCCAACCAACCCACAAT
GGGCCAACCGTGACCGTTTTGTATTGTCTAACGGCCACGGTTCCATGCTGATTTACAGCTTGTTGCATTTAAGCGGTTAC
GATGTATCCATTGAAGATTTAAAACAATTCCGTCAATTACATTCCAAAACACCGGGACACCCTGAATTTGGTTACACACC
GGGCGTTGAAACCACCACAGGCCCACTAGGTCAAGGTATTACTAACGCTGTCGGTATGGCGATTGCAGAAAAAACCCTTG
CAGGTCAATTTAACCGTGACGGTCACAACATTGTGGATCACTATACTTATGCGTTCTTAGGTGACGGTTGTTTGATGGAA
GGGATTTCCCACGAGGCTTGCTCTTTAGCGGGGACTTTAGGCTTAGGTAAATTAATTGCGTTCTACGATGACAATAACAT
TTCTATCGATGGTCATGTTGACGGTTGGTTTACTGATGACACGCAAAAACGCTTTGAAGCTTACGGCTGGCAAGTGATTC
CGGCAATCGACGGTCACAATCCGGCACAAATTATTGAGGCGATCAAACAAGCGCAAGCGGAAACCAACAAACCGACCTTA
ATTATTTGTAAAACCATTATCGGTTTCGGTTCACCAAACAAATCTAACTCTCACGATTGCCACGGCGCACCATTAGGTGA
TGAAGAAATCGCATTAACCCGTAAAGCACTCAACTGGGATTACGCACCGTTTGATATTCCGGCAGATGTCTATGCGCAAT
GGGATGCGAAAGCGAAAGGTGCAGAATTAGAAAAAGCATGGCATGAAAAATTTGCCGCCTATGCAAAAGCTTATCCGGAA
TTAGCCGCTGAATTTACCCGCCGCATGGAGAAACACCTTCCGGCTGATTGGGCAAAAGAATCTCAGGCGTTTATTGAGCA
TTTACAAGCGAACCCGGCAAGTATTGCAAGCCGCAAAGCCTCACAAAATGCCATTGAAGCTTATGCGAAAGTGTTACCGG
AATTACTCGGCGGTTCTGCCGACTTGGCAAGCTCCAACCTCACCCTTTGGTCCGGTTCTAAACCGATTCGCGCGACTCAA
AACGTAGATGGCAACTACCTCAACTACGGCGTACGTGAGTTCGGTATGGCGGCAATCATGAACGGTATTGCGCTTCACGG
TGGTTTCATTCCTTATGGCGCAACCTTCCTCATGTTCATGGAATATGCACACAACGCGATTCGCATGGCTTCATTAATGA
AACAACGTAGCTTGTTTGTATTCACCCATGATTCTATCGGTTTAGGTGAAGATGGCCCAACCCACCAACCGGTTGAACAA
ACCGCAGCGCTACGCCTCATTCCGAACCTAGAAACATGGCGTCCTTGTGACCAAGTGGAGTCTGCGATTGCATGGAAGGC
CGCGATTGAAAGAACTGATGGTCCGAGCGCGTTAATCTTCACCCGTCAAAATCTTCTTCAAATGGACCGCACTTCCGAAC
AATTAGCTAATGTGGCACGCGGTGCTTACGTGTTAAAAGACTGTGCCGGCACACCGGAGCTAATCTTCATTGCGACCGGT
TCTGAAGTGGAATTGGCGGTGAAAGCGGCAGAACAATTAACCGCAGAAGGCAAAAAAATCCGTGTGGTTTCCATGCCAAG
TACGAACGTGTTCGACAAACAAGATGAAGCTTATCGTGAATCTGTTTTACCTGCGGCAGTGACAAAACGTGTGGCCATTG
AAGCGGGCATTTCCGATGTCTGGTACAAATACGTTGGCTTCAGCGGTCGTATTGTTGGCATGAACAGCTTTGGTGAATCC
GCACCGGCAGACCAATTGTTCAAACTCTTTGGCTTCACTGTAGATAACGTCGTTGCCAAAGCGAAAGAAATTCTCTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-525)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)

Transketolase, C-terminal domain (Transketolase_C)

(549-657)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.489

99.549

0.483

Multiple sequence alignment