Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E1A98_RS01255 Genome accession   NZ_CP037857
Coordinates   260972..261448 (-) Length   158 a.a.
NCBI ID   WP_000811693.1    Uniprot ID   A0AA91EE93
Organism   Escherichia coli BW25113 strain AM187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 255972..266448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1A98_RS01220 (E1A98_01210) proB 256099..257202 (+) 1104 WP_001285288.1 glutamate 5-kinase -
  E1A98_RS01225 (E1A98_01215) proA 257214..258467 (+) 1254 WP_133279790.1 glutamate-5-semialdehyde dehydrogenase -
  E1A98_RS01230 (E1A98_01220) - 258750..259469 (+) 720 WP_223293340.1 hypothetical protein -
  E1A98_RS01240 (E1A98_01230) ykfI 260044..260385 (-) 342 WP_000854672.1 type IV toxin-antitoxin system toxin YkfI -
  E1A98_RS01245 (E1A98_01235) yafW 260406..260723 (-) 318 WP_000070395.1 type IV toxin-antitoxin system antitoxin YafW -
  E1A98_RS01250 (E1A98_01240) ykfH 260742..260963 (-) 222 WP_000691994.1 DUF987 domain-containing protein -
  E1A98_RS01255 (E1A98_01245) radC 260972..261448 (-) 477 WP_000811693.1 RadC family protein Machinery gene
  E1A98_RS01260 (E1A98_01250) yafX 261464..261922 (-) 459 WP_000211838.1 antirestriction protein -
  E1A98_RS01265 (E1A98_01255) ykfF 262020..262259 (-) 240 WP_000194654.1 DUF905 domain-containing protein -
  E1A98_RS01270 (E1A98_01260) ykfB 262336..262803 (-) 468 WP_001547765.1 protein YkfB -
  E1A98_RS01275 (E1A98_01265) yafY 262826..263269 (-) 444 WP_000824223.1 YfjS/YafY family lipoprotein -
  E1A98_RS01280 (E1A98_01270) ypjK 263269..263508 (-) 240 WP_032243554.1 protein YpjK -
  E1A98_RS01285 (E1A98_01275) - 263483..263683 (-) 201 Protein_248 DeoR family transcriptional regulator -
  E1A98_RS01290 (E1A98_01280) yafZ 263900..264721 (-) 822 WP_000197389.1 DUF932 domain-containing protein -
  E1A98_RS01295 (E1A98_01285) ykfA 264813..265676 (-) 864 WP_001065553.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18098.78 Da        Isoelectric Point: 8.7508

>NTDB_id=308482 E1A98_RS01255 WP_000811693.1 260972..261448(-) (radC) [Escherichia coli BW25113 strain AM187]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=308482 E1A98_RS01255 WP_000811693.1 260972..261448(-) (radC) [Escherichia coli BW25113 strain AM187]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA91EE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38