Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   E0708_RS15940 Genome accession   NZ_CP037449
Coordinates   3409146..3409751 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ATCC 25922     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3404146..3414751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0708_RS25150 - 3404700..3404798 (+) 99 Protein_3141 hypothetical protein -
  E0708_RS15910 (E0708_16395) rsmS 3404851..3405012 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  E0708_RS15915 (E0708_16400) priC 3405026..3405553 (-) 528 WP_000858961.1 primosomal replication protein N'' -
  E0708_RS15920 (E0708_16405) ybaN 3405623..3406000 (+) 378 WP_001188900.1 DUF454 family protein -
  E0708_RS15925 (E0708_16410) apt 3406153..3406704 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  E0708_RS15930 (E0708_16415) dnaX 3406833..3408764 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  E0708_RS15935 (E0708_16420) ybaB 3408817..3409146 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  E0708_RS15940 (E0708_16425) recR 3409146..3409751 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  E0708_RS15945 (E0708_16430) htpG 3409861..3411735 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  E0708_RS15950 (E0708_16435) adk 3411916..3412560 (+) 645 WP_001313630.1 adenylate kinase -
  E0708_RS15955 (E0708_16440) hemH 3412692..3413654 (+) 963 WP_001250114.1 ferrochelatase -
  E0708_RS15960 (E0708_16445) aes 3413651..3414610 (-) 960 WP_000801819.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=308462 E0708_RS15940 WP_001195025.1 3409146..3409751(+) (recR) [Escherichia coli strain ATCC 25922]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=308462 E0708_RS15940 WP_001195025.1 3409146..3409751(+) (recR) [Escherichia coli strain ATCC 25922]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment