Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | E0708_RS12665 | Genome accession | NZ_CP037449 |
| Coordinates | 2712372..2712848 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186775.1 | Uniprot ID | A7ZVJ5 |
| Organism | Escherichia coli strain ATCC 25922 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2707372..2717848
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E0708_RS12640 (E0708_13015) | - | 2707493..2710339 (+) | 2847 | WP_001546341.1 | Ag43/Cah family autotransporter adhesin | - |
| E0708_RS12645 (E0708_13020) | - | 2710410..2710605 (+) | 196 | Protein_2491 | DUF905 family protein | - |
| E0708_RS12650 (E0708_13030) | - | 2710723..2711541 (+) | 819 | WP_001234738.1 | DUF932 domain-containing protein | - |
| E0708_RS12660 (E0708_13040) | - | 2711883..2712356 (+) | 474 | WP_001350782.1 | antirestriction protein | - |
| E0708_RS12665 (E0708_13045) | radC | 2712372..2712848 (+) | 477 | WP_001186775.1 | RadC family protein | Machinery gene |
| E0708_RS12670 (E0708_13050) | - | 2712911..2713132 (+) | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| E0708_RS12675 (E0708_13055) | - | 2713295..2713663 (+) | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| E0708_RS12680 (E0708_13060) | - | 2713753..2714130 (+) | 378 | WP_000854759.1 | TA system toxin CbtA family protein | - |
| E0708_RS12685 (E0708_13065) | - | 2714127..2714615 (+) | 489 | WP_000761690.1 | DUF5983 family protein | - |
| E0708_RS12690 (E0708_13070) | - | 2714632..2714808 (+) | 177 | WP_000839286.1 | DUF957 domain-containing protein | - |
| E0708_RS24500 | - | 2714914..2715063 (+) | 150 | Protein_2500 | hypothetical protein | - |
| E0708_RS25215 (E0708_13075) | - | 2715033..2715167 (+) | 135 | Protein_2501 | transcriptional regulator | - |
| E0708_RS25120 | - | 2715430..2715735 (+) | 306 | Protein_2502 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17687.30 Da Isoelectric Point: 7.1437
>NTDB_id=308452 E0708_RS12665 WP_001186775.1 2712372..2712848(+) (radC) [Escherichia coli strain ATCC 25922]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=308452 E0708_RS12665 WP_001186775.1 2712372..2712848(+) (radC) [Escherichia coli strain ATCC 25922]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAACGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAACGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |