Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E0708_RS05340 Genome accession   NZ_CP037449
Coordinates   1168831..1169307 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain ATCC 25922     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1163831..1174307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0708_RS05315 (E0708_05550) - 1163997..1166513 (+) 2517 WP_001328678.1 hypothetical protein -
  E0708_RS05320 (E0708_05555) - 1166589..1167044 (+) 456 WP_000581502.1 IrmA family protein -
  E0708_RS05325 (E0708_05560) - 1167123..1167356 (+) 234 WP_001119727.1 DUF905 family protein -
  E0708_RS05330 (E0708_05570) - 1167457..1168275 (+) 819 WP_001234616.1 DUF932 domain-containing protein -
  E0708_RS05335 (E0708_05575) - 1168330..1168815 (+) 486 WP_000849564.1 antirestriction protein -
  E0708_RS05340 (E0708_05580) radC 1168831..1169307 (+) 477 WP_001186726.1 RadC family protein Machinery gene
  E0708_RS05345 (E0708_05585) - 1169370..1169591 (+) 222 WP_000692329.1 DUF987 domain-containing protein -
  E0708_RS05350 (E0708_05590) - 1169610..1170254 (+) 645 WP_000094917.1 hypothetical protein -
  E0708_RS05355 (E0708_05595) - 1170304..1170684 (+) 381 WP_001285596.1 type IV toxin-antitoxin system YeeU family antitoxin -
  E0708_RS05360 (E0708_05600) - 1170761..1171138 (+) 378 WP_000854688.1 TA system toxin CbtA family protein -
  E0708_RS05365 (E0708_05605) - 1171135..1171623 (+) 489 WP_000761701.1 DUF5983 family protein -
  E0708_RS05370 (E0708_05610) - 1171640..1171837 (+) 198 WP_000839260.1 DUF957 domain-containing protein -
  E0708_RS05375 (E0708_05615) - 1172051..1173070 (+) 1020 WP_000875213.1 IS110 family transposase -
  E0708_RS05380 (E0708_05625) - 1173354..1174199 (+) 846 WP_001280441.1 DUF4942 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=308412 E0708_RS05340 WP_001186726.1 1168831..1169307(+) (radC) [Escherichia coli strain ATCC 25922]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=308412 E0708_RS05340 WP_001186726.1 1168831..1169307(+) (radC) [Escherichia coli strain ATCC 25922]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment