Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   E0708_RS00280 Genome accession   NZ_CP037449
Coordinates   68219..68695 (+) Length   158 a.a.
NCBI ID   WP_001351157.1    Uniprot ID   -
Organism   Escherichia coli strain ATCC 25922     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 63219..73695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0708_RS00250 (E0708_00315) - 63374..64279 (+) 906 WP_000203550.1 diguanylate cyclase regulator RdcB family protein -
  E0708_RS00255 (E0708_00320) - 64276..65346 (+) 1071 WP_000102631.1 patatin-like phospholipase family protein -
  E0708_RS00260 (E0708_00325) - 65482..66159 (+) 678 WP_001362823.1 hypothetical protein -
  E0708_RS00265 (E0708_00330) - 66175..66585 (+) 411 WP_000846704.1 hypothetical protein -
  E0708_RS00270 (E0708_00340) - 66806..67627 (+) 822 WP_001234569.1 DUF932 domain-containing protein -
  E0708_RS00275 (E0708_00345) - 67718..68203 (+) 486 WP_000213703.1 antirestriction protein -
  E0708_RS00280 (E0708_00350) radC 68219..68695 (+) 477 WP_001351157.1 RadC family protein Machinery gene
  E0708_RS00285 (E0708_00355) yeeT 68764..68985 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  E0708_RS00290 (E0708_00360) cbeA 69059..69427 (+) 369 WP_001285586.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  E0708_RS00295 (E0708_00365) cbtA 69516..69890 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  E0708_RS00300 (E0708_00370) yeeW 69887..70081 (+) 195 WP_000988601.1 DUF5983 family protein -
  E0708_RS00305 (E0708_00375) - 70127..70207 (+) 81 Protein_63 hypothetical protein -
  E0708_RS25175 (E0708_00380) - 70496..70669 (-) 174 WP_032082634.1 transposase domain-containing protein -
  E0708_RS25180 (E0708_00385) - 70696..70878 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  E0708_RS00320 (E0708_00390) tmaR 70979..71308 (-) 330 WP_000450409.1 DUF496 family protein -
  E0708_RS00325 (E0708_00395) yeeA 71480..72538 (-) 1059 WP_001200890.1 FUSC family protein -
  E0708_RS00330 (E0708_00400) sbmC 72736..73209 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17593.25 Da        Isoelectric Point: 6.9180

>NTDB_id=308394 E0708_RS00280 WP_001351157.1 68219..68695(+) (radC) [Escherichia coli strain ATCC 25922]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKCALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=308394 E0708_RS00280 WP_001351157.1 68219..68695(+) (radC) [Escherichia coli strain ATCC 25922]
ATGCAACAGATTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTATATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAATGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment