Detailed information NTG0308345

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EZV63_RS14265
• Genome accession: NZ_CP036534
• Coordinates: 3260531..3261529 (-)
• Length: 332 a.a.
• NCBI ID: WP_031044499.1
• Uniprot ID: A0A191UZ34
• Organism: Streptomyces sp. VN1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3255531..3266529

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EZV63_RS14245 (EZV63_14420)	pfkB	3256300..3257247 (-)	948	WP_037772676.1	1-phosphofructokinase	-
EZV63_RS14250 (EZV63_14425)	-	3257244..3258005 (-)	762	WP_031044509.1	DeoR/GlpR family DNA-binding transcription regulator	-
EZV63_RS14255 (EZV63_14430)	-	3258292..3259263 (+)	972	WP_037772679.1	WYL domain-containing protein	-
EZV63_RS14260 (EZV63_14435)	-	3259298..3260047 (-)	750	WP_078536182.1	TetR family transcriptional regulator	-
EZV63_RS14265 (EZV63_14440)	rpoS	3260531..3261529 (-)	999	WP_031044499.1	sigma-70 family RNA polymerase sigma factor	Regulator
EZV63_RS14270 (EZV63_14445)	-	3261752..3262270 (+)	519	WP_037772680.1	GNAT family N-acetyltransferase	-
EZV63_RS14275 (EZV63_14450)	-	3262318..3263079 (-)	762	WP_037772701.1	class III extradiol ring-cleavage dioxygenase	-
EZV63_RS14280 (EZV63_14455)	-	3263243..3263848 (+)	606	WP_224289876.1	MarR family transcriptional regulator	-
EZV63_RS14285 (EZV63_14460)	-	3263961..3265505 (-)	1545	WP_031044493.1	MFS transporter	-
EZV63_RS14290 (EZV63_14465)	-	3265686..3266339 (-)	654	WP_037772685.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37140.83 Da
• Isoelectric Point: 4.9735

>NTDB_id=308345 EZV63_RS14265 WP_031044499.1 3260531..3261529(-) (rpoS) [Streptomyces sp. VN1]
MATRAVARRKSATGETSGAATSVRANGGELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGYEETGAD
ATREELQALIDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELGSTPERVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARSTGFEAAA

Nucleotide

• Length: 999 bp

>NTDB_id=308345 EZV63_RS14265 WP_031044499.1 3260531..3261529(-) (rpoS) [Streptomyces sp. VN1]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCTCCGGCGCGGCAACCAGCGTCCGCGCCAACGG
CGGAGAGCTCGCCGACCGCGATCTGGTCGGCATGTACCTCGACGAGATCGCCCGCACACCCCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCCCAGACCATCGAGGCCGGTGTGTTCGCGCGGCAGGTTCTCGAAGGCTATGAGGAGACGGGGGCGGAC
GCCACCCGGGAGGAGCTCCAGGCCCTGATCGACGAGAGCGAGCGGGCCAAGGACGTCTTCATCCGCTCCAACCTCCGTCT
CGTCGTCGCGGTCGCCCGGCGCTACCCGCGCAGTGGCCTGCCGCTCCTGGACCTGATCCAGGAGGGCAACGCCGGTCTGG
TCCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGGCAGGCCATC
ACCCGGTCCATCGCCGACCAGTCGCGCACCATCCGGCTGCCCGTGCACCTGGTGGAGGAGCTGGGCCGGATCCGGCGTGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGCGAGCCGGAGCCCGCGGAGATCGCGGCCGAGCTGGGCTCGACACCGGAGC
GCGTCACCGACGTGCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCGGTGCTGACCCTGCTGCGCAGCGAGGAACTGGACGA
CCTCATCGGCCGCCTCGACCCGCGCACCGCGTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACCC
TCACCGAGGTCGGCAAGGAGCACGGCCTCACGCGTGAGCGCATCCGCCAGATCGAGAAGCACGCGCTGCTCGAACTGAAG
AAGCTGGCGCGCTCCACCGGCTTCGAGGCGGCGGCGTAG

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70, region 4 (Sigma70_r4) (269-321)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

3D structure

• AlphaFold DB: A0A191UZ34

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.468	90.06	0.364