Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NT05HA_RS05890 Genome accession   NC_012913
Coordinates   1298015..1298617 (-) Length   200 a.a.
NCBI ID   WP_012771666.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus NJ8700     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1293015..1303617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT05HA_RS12045 - 1293329..1293427 (-) 99 WP_109860403.1 hypothetical protein -
  NT05HA_RS05865 - 1293951..1294259 (-) 309 WP_005701051.1 ABC transporter ATP-binding protein -
  NT05HA_RS05870 (NT05HA_1285) - 1294278..1294991 (-) 714 WP_005701054.1 AAA family ATPase -
  NT05HA_RS05880 (NT05HA_1287) secG 1295584..1295934 (-) 351 WP_005701057.1 preprotein translocase subunit SecG -
  NT05HA_RS05885 (NT05HA_1289) - 1296095..1297999 (-) 1905 WP_005701059.1 DNA topoisomerase III -
  NT05HA_RS05890 (NT05HA_1290) recR 1298015..1298617 (-) 603 WP_012771666.1 recombination mediator RecR Machinery gene
  NT05HA_RS05895 (NT05HA_1291) - 1298704..1299033 (-) 330 WP_005701065.1 YbaB/EbfC family nucleoid-associated protein -
  NT05HA_RS05900 (NT05HA_1293) - 1299217..1300287 (+) 1071 WP_012771667.1 metallophosphoesterase -
  NT05HA_RS05905 (NT05HA_1294) - 1300364..1301257 (+) 894 WP_005701068.1 Fe(3+) dicitrate ABC transporter substrate-binding protein FecB -
  NT05HA_RS05910 (NT05HA_1295) fecC 1301257..1302246 (+) 990 WP_005701069.1 iron-dicitrate ABC transporter permease FecC -
  NT05HA_RS05915 (NT05HA_1296) fecD 1302246..1303229 (+) 984 WP_005701070.1 Fe(3+) dicitrate ABC transporter permease subunit FecD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21873.21 Da        Isoelectric Point: 6.6822

>NTDB_id=30824 NT05HA_RS05890 WP_012771666.1 1298015..1298617(-) (recR) [Aggregatibacter aphrophilus NJ8700]
MQTSPLLENLIESLRVLPGVGPKSAQRMAYHLLQHNRGGGMRLAQSLTEAMSKIGHCEHCRTFTEEAVCSICNNPHRQNS
GLLCVVEMPADILAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLQTESFKEVILATNPTVEGDATANYIAEL
CLQQKVKVSRIAHGIPVGGELEMVDGTTLTHSFLGRREIG

Nucleotide


Download         Length: 603 bp        

>NTDB_id=30824 NT05HA_RS05890 WP_012771666.1 1298015..1298617(-) (recR) [Aggregatibacter aphrophilus NJ8700]
ATGCAAACCAGTCCATTGTTAGAAAATTTAATCGAAAGCTTACGCGTGCTACCGGGGGTCGGGCCAAAATCCGCACAACG
GATGGCATACCATTTATTGCAGCATAATCGAGGCGGTGGAATGCGTTTGGCGCAAAGTTTGACGGAAGCGATGTCGAAAA
TCGGACACTGCGAACATTGCCGAACCTTTACCGAGGAAGCGGTTTGCAGTATTTGTAACAATCCTCATCGTCAAAATTCA
GGTTTGTTGTGCGTGGTGGAAATGCCGGCAGACATTCTTGCTATTGAACAAACCGGTCAATTCTCAGGACGTTATTTCGT
GCTTATGGGGCATTTGTCGCCGTTAGATGGCATCGGTCCGCGTGAAATCGGCTTGGATTTACTGCAAAAACGATTGCAAA
CGGAATCGTTTAAAGAAGTGATTCTTGCCACCAACCCAACGGTGGAAGGCGATGCCACCGCAAACTACATCGCAGAACTT
TGTTTGCAACAAAAAGTTAAAGTCAGCCGTATTGCCCACGGCATCCCGGTGGGCGGGGAGCTGGAAATGGTGGACGGCAC
CACATTAACCCATTCTTTCTTGGGCCGTCGTGAAATCGGCTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

99.5

0.435
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.719

99.5

0.435

Multiple sequence alignment