Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EZZ25_RS13125 Genome accession   NZ_CP036499
Coordinates   2789392..2789994 (-) Length   200 a.a.
NCBI ID   WP_001260579.1    Uniprot ID   Q9KT49
Organism   Vibrio cholerae strain 20000     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2784392..2794994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZZ25_RS13095 (EZZ25_13095) - 2784631..2785086 (-) 456 WP_001918409.1 Lrp/AsnC family transcriptional regulator -
  EZZ25_RS13100 (EZZ25_13100) - 2785211..2786278 (+) 1068 WP_088124576.1 PLP-dependent cysteine synthase family protein -
  EZZ25_RS13105 (EZZ25_13105) sohB 2786403..2787464 (-) 1062 WP_000394906.1 protease SohB -
  EZZ25_RS13110 (EZZ25_13110) - 2787623..2788366 (+) 744 WP_001109954.1 YciK family oxidoreductase -
  EZZ25_RS13115 (EZZ25_13115) - 2788460..2788897 (-) 438 WP_001880862.1 YcgN family cysteine cluster protein -
  EZZ25_RS13120 (EZZ25_13120) - 2789035..2789283 (+) 249 WP_000340591.1 YkgJ family cysteine cluster protein -
  EZZ25_RS13125 (EZZ25_13125) recR 2789392..2789994 (-) 603 WP_001260579.1 recombination mediator RecR Machinery gene
  EZZ25_RS13130 (EZZ25_13130) - 2790009..2790338 (-) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  EZZ25_RS13135 (EZZ25_13135) dnaX 2790409..2792487 (-) 2079 WP_000120799.1 DNA polymerase III subunit gamma/tau -
  EZZ25_RS13140 (EZZ25_13140) apt 2792506..2793051 (-) 546 WP_000206217.1 adenine phosphoribosyltransferase -
  EZZ25_RS13145 (EZZ25_13145) - 2793183..2793581 (-) 399 WP_025998899.1 YbaN family protein -
  EZZ25_RS19670 (EZZ25_13150) - 2793581..2793712 (-) 132 WP_000013199.1 hypothetical protein -
  EZZ25_RS13155 (EZZ25_13155) - 2793882..2794973 (-) 1092 WP_001911483.1 response regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21840.95 Da        Isoelectric Point: 6.1558

>NTDB_id=308128 EZZ25_RS13125 WP_001260579.1 2789392..2789994(-) (recR) [Vibrio cholerae strain 20000]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLAEALSQAMVEIGHCQECRTFTEQDVCHICSNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRGDISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=308128 EZZ25_RS13125 WP_001260579.1 2789392..2789994(-) (recR) [Vibrio cholerae strain 20000]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCATTACGCTGCCTGCCGGGCGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTCCATCTGTTACAGCGCGATCGTAAAGGTGGTTTACAACTGGCTGAGGCACTGAGTCAGGCGATGGTCGAAA
TCGGCCATTGCCAGGAATGCCGAACTTTTACTGAGCAGGATGTTTGCCACATCTGTAGCAACCCAAAACGTAAAGAAAAT
GGTCAGTTGTGTGTGGTTGAAAGCCCTGCAGATATTGCGGCGCTAGAAGCTACCGGTCAATTTTCTGGTCGCTATTTTGT
GTTGATGGGGCACTTATCACCGCTGGATGGTATTGGTCCGAGCGATATTGGCCTCGATACGCTGGATTATCGCTTGCAGC
GCGGTGATATCAGTGAGGTGATCCTCGCCACTAACCCGACGGTGGAAGGTGAGGCGACCGCGCAATACATTGCCGAGTTG
TGCCGTGAGCATCAAGTCACCGCAAGCCGCATTGCACATGGTGTTCCCGTGGGCGGCGAACTTGAGTTGGTGGATGGCAC
GACCTTATCGCATTCGCTGTTGGGCCGTCACAAACTGTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KT49

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44