Detailed information
Bioinformatically predicted
Overview
| Name | pilL-C | Type | Machinery gene |
| Locus tag | EZZ25_RS11365 | Genome accession | NZ_CP036499 |
| Coordinates | 2399228..2399608 (+) | Length | 126 a.a. |
| NCBI ID | WP_000045526.1 | Uniprot ID | Q6BBL2 |
| Organism | Vibrio cholerae strain 20000 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2394228..2404608
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EZZ25_RS11340 (EZZ25_11340) | - | 2394820..2395476 (+) | 657 | WP_000974697.1 | HEAT repeat domain-containing protein | - |
| EZZ25_RS11345 (EZZ25_11345) | - | 2395487..2396332 (+) | 846 | WP_001002906.1 | protein-glutamate O-methyltransferase CheR | - |
| EZZ25_RS11350 (EZZ25_11350) | - | 2396332..2396703 (+) | 372 | WP_000757478.1 | response regulator | - |
| EZZ25_RS11355 (EZZ25_11355) | - | 2396712..2398985 (+) | 2274 | WP_001178899.1 | chemotaxis protein CheA | - |
| EZZ25_RS11360 (EZZ25_11360) | - | 2398975..2399235 (+) | 261 | WP_001143862.1 | hypothetical protein | - |
| EZZ25_RS11365 (EZZ25_11365) | pilL-C | 2399228..2399608 (+) | 381 | WP_000045526.1 | response regulator | Machinery gene |
| EZZ25_RS11370 (EZZ25_11370) | - | 2399616..2400851 (+) | 1236 | WP_000621946.1 | methyl-accepting chemotaxis protein | - |
| EZZ25_RS11375 (EZZ25_11375) | - | 2400906..2401220 (-) | 315 | WP_000312389.1 | multidrug efflux SMR transporter | - |
| EZZ25_RS11380 (EZZ25_11380) | - | 2401366..2402880 (-) | 1515 | WP_000411506.1 | deoxyribodipyrimidine photo-lyase | - |
| EZZ25_RS11385 (EZZ25_11385) | - | 2403036..2404442 (-) | 1407 | WP_088124602.1 | MDR family MFS transporter | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13674.04 Da Isoelectric Point: 9.8959
>NTDB_id=308115 EZZ25_RS11365 WP_000045526.1 2399228..2399608(+) (pilL-C) [Vibrio cholerae strain 20000]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
Nucleotide
Download Length: 381 bp
>NTDB_id=308115 EZZ25_RS11365 WP_000045526.1 2399228..2399608(+) (pilL-C) [Vibrio cholerae strain 20000]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACCGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACCGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilL-C | Synechocystis sp. PCC 6803 |
39.2 |
99.206 |
0.389 |