Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EZZ25_RS09380 Genome accession   NZ_CP036499
Coordinates   1950641..1951117 (-) Length   158 a.a.
NCBI ID   WP_131476914.1    Uniprot ID   -
Organism   Vibrio cholerae strain 20000     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1945641..1956117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZZ25_RS09350 (EZZ25_09350) - 1946256..1946456 (+) 201 WP_001293720.1 AlpA family transcriptional regulator -
  EZZ25_RS19290 - 1946536..1946715 (-) 180 WP_114808865.1 ribbon-helix-helix protein, CopG family -
  EZZ25_RS09355 (EZZ25_09355) - 1946721..1947557 (-) 837 WP_165490531.1 CopG family transcriptional regulator -
  EZZ25_RS09360 (EZZ25_09360) - 1947950..1948591 (+) 642 WP_000825658.1 inovirus Gp2 family protein -
  EZZ25_RS09365 (EZZ25_09365) - 1948626..1949612 (-) 987 WP_000858606.1 GTPase family protein -
  EZZ25_RS09370 (EZZ25_09370) - 1949719..1950165 (-) 447 WP_000065400.1 DUF2787 domain-containing protein -
  EZZ25_RS09375 (EZZ25_09375) - 1950216..1950644 (-) 429 WP_000636134.1 DUF2787 domain-containing protein -
  EZZ25_RS09380 (EZZ25_09380) radC 1950641..1951117 (-) 477 WP_131476914.1 DNA repair protein RadC Machinery gene
  EZZ25_RS09385 (EZZ25_09385) - 1951261..1951437 (+) 177 WP_001211493.1 AlpA family transcriptional regulator -
  EZZ25_RS09390 (EZZ25_09390) - 1951585..1953930 (-) 2346 WP_001211294.1 exo-alpha-sialidase -
  EZZ25_RS09395 (EZZ25_09395) nagA 1954353..1955489 (-) 1137 WP_001185224.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18278.71 Da        Isoelectric Point: 6.9191

>NTDB_id=308111 EZZ25_RS09380 WP_131476914.1 1950641..1951117(-) (radC) [Vibrio cholerae strain 20000]
MTHFPRHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEMFAVLFLDNQHRLIEFKELFRG
TVDAASVYPREVLKEAVNFNAAAVIFAHNHPSGDPEPSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVSVAERGWL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=308111 EZZ25_RS09380 WP_131476914.1 1950641..1951117(-) (radC) [Vibrio cholerae strain 20000]
ATGACTCATTTTCCTCGCCACCGCTATCTACTCTCGCAACGAGCTTATGAGCATCGAGTACTGGAAGAAGCAGCAGAGAT
CCTTGAACAGCGTTATGTGCGCGGTGAAACCTTTGCACGTACGGAAAACACCACGGAATACTTACGCTGTAAACTTGCTG
GATACGAGCACGAAATGTTTGCCGTACTGTTTTTGGATAACCAGCATCGGCTAATTGAATTTAAGGAGCTATTTCGCGGT
ACGGTCGATGCCGCCAGTGTCTACCCAAGAGAGGTGCTAAAGGAGGCAGTAAACTTTAACGCAGCAGCGGTGATCTTTGC
CCATAACCACCCCTCTGGCGATCCGGAGCCTTCACAAGCCGATAGGCGTATTACTCAGCGCTTAAAAGACGCCTTATCAC
TGGTCGATATTCGTGTGCTGGACCATGTGGTCGTTGGCAAAAGCAGTGTGTCAGTTGCAGAAAGGGGCTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(41-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

47.857

88.608

0.424