Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | EZZ25_RS04620 | Genome accession | NZ_CP036499 |
| Coordinates | 943368..944558 (+) | Length | 396 a.a. |
| NCBI ID | WP_088127518.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain 20000 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 938368..949558
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EZZ25_RS04575 (EZZ25_04575) | - | 939205..939675 (-) | 471 | WP_000224703.1 | Dps family protein | - |
| EZZ25_RS04580 (EZZ25_04580) | - | 939845..940174 (-) | 330 | WP_001117043.1 | DUF2500 domain-containing protein | - |
| EZZ25_RS04585 (EZZ25_04585) | - | 940379..940747 (+) | 369 | WP_001289435.1 | DUF4145 domain-containing protein | - |
| EZZ25_RS04600 (EZZ25_04600) | - | 941250..941462 (+) | 213 | WP_000479996.1 | hypothetical protein | - |
| EZZ25_RS04605 (EZZ25_04605) | - | 941624..942253 (+) | 630 | WP_000062270.1 | lysoplasmalogenase | - |
| EZZ25_RS04610 (EZZ25_04610) | - | 942302..942568 (-) | 267 | WP_000645840.1 | DUF1145 domain-containing protein | - |
| EZZ25_RS04615 (EZZ25_04615) | rsmD | 942565..943164 (-) | 600 | WP_001189770.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| EZZ25_RS04620 (EZZ25_04620) | pilA | 943368..944558 (+) | 1191 | WP_088127518.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| EZZ25_RS04625 (EZZ25_04625) | ftsE | 944607..945281 (+) | 675 | WP_000617864.1 | cell division ATP-binding protein FtsE | - |
| EZZ25_RS04630 (EZZ25_04630) | ftsX | 945271..946263 (+) | 993 | WP_000279340.1 | permease-like cell division protein FtsX | - |
| EZZ25_RS04635 (EZZ25_04635) | rpoH | 946433..947293 (+) | 861 | WP_000184359.1 | RNA polymerase sigma factor RpoH | - |
| EZZ25_RS04640 (EZZ25_04640) | sthA | 947494..948894 (-) | 1401 | WP_000529898.1 | Si-specific NAD(P)(+) transhydrogenase | - |
Sequence
Protein
Download Length: 396 a.a. Molecular weight: 43229.06 Da Isoelectric Point: 4.5077
>NTDB_id=308079 EZZ25_RS04620 WP_088127518.1 943368..944558(+) (pilA) [Vibrio cholerae strain 20000]
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQAVAIQAETALTETETETETETETETETETATVEP
ARIVEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTAKASRQQLR
DGEALYGLLKEEMAEILSQVEKPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQ
VWGERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDA
GTGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE
MTEKKKRGLLSWLGFGDEEKSQTTATDTQTQDEPQSQADVEAVAIQAVAIQAETALTETETETETETETETETETATVEP
ARIVEQEKPTESFFARLKRSLSRTKANIGAGFFGLFKGKKIDDDLFEELEEQLLIADVGMDTTSKIIANLTAKASRQQLR
DGEALYGLLKEEMAEILSQVEKPLVIDTEKKPYVILMVGVNGVGKTTTIGKLAKQFQAQGKKVMLAAGDTFRAAAVEQLQ
VWGERNQVPVIAQHTGADSASVIYDAIEAAKARGIDVVIADTAGRLQNKSNLMEELRKIVRVMKKIDDSAPHEIMLTLDA
GTGQNAISQAKLFSDVAPITGITLTKLDGTAKGGVIFAIADQFQIPIRYIGVGEKIDDLRPFATQEFIDALFSREE
Nucleotide
Download Length: 1191 bp
>NTDB_id=308079 EZZ25_RS04620 WP_088127518.1 943368..944558(+) (pilA) [Vibrio cholerae strain 20000]
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTAGCGATTCAAGCGGTAGCGATTCAAGCGGAAA
CTGCGTTAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACTGCCACGGTTGAACCT
GCACGTATTGTTGAACAAGAAAAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGTCGCACCAAAGCGAA
TATTGGCGCAGGCTTCTTTGGCCTGTTTAAAGGAAAAAAGATTGATGATGACTTGTTCGAAGAGCTCGAAGAACAACTGC
TGATTGCCGATGTCGGCATGGATACGACCAGCAAAATTATCGCTAATTTGACCGCGAAAGCTTCTCGCCAGCAACTGCGT
GATGGGGAAGCGCTGTACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGAAGCCATTGGTGATCGA
CACTGAGAAAAAACCTTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTA
AACAGTTCCAAGCGCAAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAA
GTGTGGGGAGAGCGTAATCAAGTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGAT
TGAAGCGGCGAAAGCGCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGTCGTCTGCAAAACAAAAGTAACCTGATGG
AAGAGCTGCGCAAGATTGTGCGCGTGATGAAGAAGATTGATGACAGCGCGCCACATGAAATCATGTTGACGCTGGATGCG
GGTACCGGACAAAACGCGATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCT
TGATGGCACCGCTAAAGGTGGGGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCG
AGAAAATTGACGACTTACGTCCATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA
ATGACGGAAAAAAAGAAGCGTGGCTTGTTGTCATGGCTTGGATTTGGTGACGAAGAGAAAAGCCAAACCACTGCAACGGA
TACTCAAACGCAGGATGAACCACAAAGCCAAGCCGATGTTGAAGCGGTAGCGATTCAAGCGGTAGCGATTCAAGCGGAAA
CTGCGTTAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACAGAAACTGCCACGGTTGAACCT
GCACGTATTGTTGAACAAGAAAAACCGACCGAAAGTTTCTTTGCGCGCTTAAAGCGCAGTTTGAGTCGCACCAAAGCGAA
TATTGGCGCAGGCTTCTTTGGCCTGTTTAAAGGAAAAAAGATTGATGATGACTTGTTCGAAGAGCTCGAAGAACAACTGC
TGATTGCCGATGTCGGCATGGATACGACCAGCAAAATTATCGCTAATTTGACCGCGAAAGCTTCTCGCCAGCAACTGCGT
GATGGGGAAGCGCTGTACGGTCTGCTGAAAGAAGAGATGGCCGAGATTCTCTCTCAGGTCGAGAAGCCATTGGTGATCGA
CACTGAGAAAAAACCTTACGTGATCTTGATGGTGGGCGTGAATGGGGTGGGTAAAACTACCACGATCGGTAAACTGGCTA
AACAGTTCCAAGCGCAAGGCAAGAAAGTGATGTTGGCAGCGGGCGATACCTTCCGTGCTGCAGCGGTTGAGCAGTTGCAA
GTGTGGGGAGAGCGTAATCAAGTGCCTGTCATCGCTCAGCATACTGGCGCCGACAGTGCCTCCGTCATTTATGATGCGAT
TGAAGCGGCGAAAGCGCGCGGGATTGACGTGGTGATTGCGGATACCGCAGGTCGTCTGCAAAACAAAAGTAACCTGATGG
AAGAGCTGCGCAAGATTGTGCGCGTGATGAAGAAGATTGATGACAGCGCGCCACATGAAATCATGTTGACGCTGGATGCG
GGTACCGGACAAAACGCGATCAGTCAGGCCAAATTGTTTAGTGATGTAGCGCCCATCACGGGCATTACCTTAACTAAGCT
TGATGGCACCGCTAAAGGTGGGGTGATTTTCGCGATTGCCGATCAATTCCAGATCCCAATCCGTTATATCGGTGTCGGCG
AGAAAATTGACGACTTACGTCCATTTGCAACACAAGAGTTTATCGACGCGCTATTTAGCCGCGAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
53.821 |
76.01 |
0.409 |