Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | EZZ25_RS00355 | Genome accession | NZ_CP036499 |
| Coordinates | 71319..71795 (+) | Length | 158 a.a. |
| NCBI ID | WP_000148678.1 | Uniprot ID | A0A2J9V1L1 |
| Organism | Vibrio cholerae strain 20000 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 66319..76795
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EZZ25_RS00335 (EZZ25_00335) | dcm | 68174..69496 (+) | 1323 | WP_000818853.1 | DNA (cytosine-5-)-methyltransferase | - |
| EZZ25_RS00340 (EZZ25_00340) | - | 69630..70463 (-) | 834 | WP_001053265.1 | hypothetical protein | - |
| EZZ25_RS00345 (EZZ25_00345) | - | 70623..70886 (+) | 264 | Protein_67 | transposase | - |
| EZZ25_RS00350 (EZZ25_00350) | - | 70999..71175 (-) | 177 | WP_001211493.1 | AlpA family transcriptional regulator | - |
| EZZ25_RS00355 (EZZ25_00355) | radC | 71319..71795 (+) | 477 | WP_000148678.1 | DNA repair protein RadC | Machinery gene |
| EZZ25_RS00360 (EZZ25_00360) | - | 71792..72220 (+) | 429 | WP_000636134.1 | DUF2787 domain-containing protein | - |
| EZZ25_RS00365 (EZZ25_00365) | - | 72271..72717 (+) | 447 | WP_000065400.1 | DUF2787 domain-containing protein | - |
| EZZ25_RS00370 (EZZ25_00370) | - | 72824..73810 (+) | 987 | WP_000858606.1 | GTPase family protein | - |
| EZZ25_RS00375 (EZZ25_00375) | - | 73845..74486 (-) | 642 | WP_000825658.1 | inovirus Gp2 family protein | - |
| EZZ25_RS00385 (EZZ25_00385) | - | 75484..75897 (+) | 414 | WP_230965097.1 | hypothetical protein | - |
| EZZ25_RS00390 (EZZ25_00390) | - | 75990..76190 (-) | 201 | WP_000045911.1 | AlpA family transcriptional regulator | - |
| EZZ25_RS00395 (EZZ25_00395) | - | 76282..76572 (-) | 291 | WP_000639510.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 18292.74 Da Isoelectric Point: 6.9191
>NTDB_id=308047 EZZ25_RS00355 WP_000148678.1 71319..71795(+) (radC) [Vibrio cholerae strain 20000]
MTHFPRHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEMFAVLFLDNQHRLIEFKELFRG
TVDAASVYPREVLKEALNVNAAAVIFAHNHPSGDPEPSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVSFAERGWL
MTHFPRHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEMFAVLFLDNQHRLIEFKELFRG
TVDAASVYPREVLKEALNVNAAAVIFAHNHPSGDPEPSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVSFAERGWL
Nucleotide
Download Length: 477 bp
>NTDB_id=308047 EZZ25_RS00355 WP_000148678.1 71319..71795(+) (radC) [Vibrio cholerae strain 20000]
ATGACTCATTTTCCTCGCCACCGCTATCTACTCTCGCAACGAGCTTATGAGCATCGAGTACTGGAAGAAGCAGCAGAGAT
CCTTGAACAGCGTTATGTGCGCGGTGAAACCTTTGCACGTACGGAAAACACCACGGAATACTTACGCTGTAAACTTGCTG
GATACGAGCACGAAATGTTTGCCGTACTGTTTTTGGATAACCAGCATCGGCTAATTGAATTTAAGGAGCTATTTCGCGGT
ACGGTCGATGCCGCCAGTGTCTACCCAAGAGAGGTGCTAAAGGAGGCACTAAACGTTAACGCAGCAGCGGTGATCTTTGC
CCATAACCACCCCTCTGGCGATCCGGAGCCTTCACAAGCCGATAGGCGTATTACTCAGCGCTTAAAAGACGCCTTATCAC
TGGTCGATATTCGTGTGCTGGACCATGTGGTCGTTGGCAAAAGCAGTGTGTCATTTGCAGAAAGGGGCTGGCTATGA
ATGACTCATTTTCCTCGCCACCGCTATCTACTCTCGCAACGAGCTTATGAGCATCGAGTACTGGAAGAAGCAGCAGAGAT
CCTTGAACAGCGTTATGTGCGCGGTGAAACCTTTGCACGTACGGAAAACACCACGGAATACTTACGCTGTAAACTTGCTG
GATACGAGCACGAAATGTTTGCCGTACTGTTTTTGGATAACCAGCATCGGCTAATTGAATTTAAGGAGCTATTTCGCGGT
ACGGTCGATGCCGCCAGTGTCTACCCAAGAGAGGTGCTAAAGGAGGCACTAAACGTTAACGCAGCAGCGGTGATCTTTGC
CCATAACCACCCCTCTGGCGATCCGGAGCCTTCACAAGCCGATAGGCGTATTACTCAGCGCTTAAAAGACGCCTTATCAC
TGGTCGATATTCGTGTGCTGGACCATGTGGTCGTTGGCAAAAGCAGTGTGTCATTTGCAGAAAGGGGCTGGCTATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
49.286 |
88.608 |
0.437 |