Detailed information NTG0308026

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EZZ78_RS22165
• Genome accession: NZ_CP036492
• Coordinates: 4819595..4820599 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain Paer4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4814595..4825599

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EZZ78_RS22150 (EZZ78_22670)	-	4815078..4816085 (+)	1008	WP_003113874.1	TolB family protein	-
EZZ78_RS22155 (EZZ78_22680)	mutS	4816211..4818778 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
EZZ78_RS22160 (EZZ78_22685)	fdxA	4818845..4819168 (+)	324	WP_003092272.1	ferredoxin FdxA	-
EZZ78_RS22165 (EZZ78_22690)	rpoS	4819595..4820599 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EZZ78_RS22170 (EZZ78_22695)	-	4820704..4821597 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
EZZ78_RS22175 (EZZ78_22700)	-	4821643..4822278 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EZZ78_RS22180 (EZZ78_22705)	surE	4822311..4823060 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EZZ78_RS22185 (EZZ78_22710)	truD	4823048..4824115 (-)	1068	WP_003113870.1	tRNA pseudouridine(13) synthase TruD	-
EZZ78_RS22190 (EZZ78_22715)	ispF	4824112..4824585 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EZZ78_RS22195 (EZZ78_22720)	fghA	4824656..4825507 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=308026 EZZ78_RS22165 WP_003113871.1 4819595..4820599(-) (rpoS) [Pseudomonas aeruginosa strain Paer4]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=308026 EZZ78_RS22165 WP_003113871.1 4819595..4820599(-) (rpoS) [Pseudomonas aeruginosa strain Paer4]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653