Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NPUN_RS29305 Genome accession   NC_010628
Coordinates   7153471..7154994 (-) Length   507 a.a.
NCBI ID   WP_012412028.1    Uniprot ID   B2J969
Organism   Nostoc punctiforme PCC 73102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7148471..7159994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPUN_RS29280 (Npun_R5782) - 7149111..7150361 (-) 1251 WP_012412023.1 serine/threonine-protein kinase -
  NPUN_RS29285 (Npun_R5783) - 7150945..7151778 (-) 834 WP_012412024.1 Uma2 family endonuclease -
  NPUN_RS44920 - 7151787..7151873 (-) 87 WP_234711163.1 hypothetical protein -
  NPUN_RS29290 (Npun_R5784) - 7152031..7152240 (-) 210 WP_012412025.1 hypothetical protein -
  NPUN_RS29295 (Npun_R5785) - 7152296..7152622 (-) 327 WP_041565705.1 WD40 repeat domain-containing protein -
  NPUN_RS29300 (Npun_R5786) - 7152606..7153355 (-) 750 WP_012412027.1 Uma2 family endonuclease -
  NPUN_RS29305 (Npun_R5787) radA 7153471..7154994 (-) 1524 WP_012412028.1 DNA repair protein RadA Machinery gene
  NPUN_RS29310 (Npun_F5788) rpaB 7155166..7155894 (+) 729 WP_012412029.1 response regulator transcription factor RpaB -
  NPUN_RS29315 (Npun_F5789) - 7155993..7156631 (+) 639 WP_012412030.1 cofactor assembly of complex C subunit B -
  NPUN_RS29320 (Npun_R5790) - 7156939..7157853 (-) 915 WP_012412031.1 M48 family metallopeptidase -
  NPUN_RS42205 - 7157859..7158008 (+) 150 WP_167315675.1 hypothetical protein -
  NPUN_RS29325 (Npun_F5791) - 7158111..7158629 (+) 519 WP_012412032.1 DUF456 domain-containing protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54421.26 Da        Isoelectric Point: 4.9280

>NTDB_id=30795 NPUN_RS29305 WP_012412028.1 7153471..7154994(-) (radA) [Nostoc punctiforme PCC 73102]
MAKPKTFFTCNECGAESPQWFGKCPACGTYNSLEEQISIQSSVDVPSRGGVSSWQSAQGNGKSHNKPAKARASLTFDQIT
DRQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYVTGEESGQQVKLRASRLGVSKPL
SVVNEEKVTVVDPTLPIDPDSIGADLYVLPETDLEEILREIDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAALM
KVAKHEDVTMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVTDGLREVSNPSE
LFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGVDYNRLVQILAVLEKRVGIPMSKLDSYVASAGG
LNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKFPDLNIEILPV
SKVIDAIIAAIPHQELTADDLEPDEDE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=30795 NPUN_RS29305 WP_012412028.1 7153471..7154994(-) (radA) [Nostoc punctiforme PCC 73102]
ATGGCAAAGCCAAAAACCTTTTTTACTTGTAATGAATGTGGAGCAGAATCGCCCCAGTGGTTTGGTAAGTGTCCAGCTTG
CGGTACTTACAACTCTCTAGAAGAACAAATTTCTATTCAATCCTCAGTAGATGTACCCAGCCGAGGGGGAGTGAGTAGTT
GGCAATCAGCTCAAGGTAATGGCAAATCCCACAATAAACCAGCTAAAGCGCGAGCCTCTTTAACATTCGATCAAATTACC
GATCGCCAAATCGCTCGCTGGGAGTCTGGTTATGGAGAATTAGATCGAGTGCTTGGAGGTGGGGTTGTCCCTGGCTCTAT
GGTGCTGATTGGTGGCGATCCGGGTATTGGTAAATCGACTTTATTGTTGCAAGTATCAAATCAACTAGCACAGAAATATC
GCATCCTTTACGTAACTGGTGAAGAATCAGGGCAGCAGGTAAAATTACGAGCTTCTCGTTTAGGAGTATCAAAACCCCTA
AGTGTGGTTAATGAGGAGAAGGTAACAGTAGTAGATCCTACATTACCCATAGACCCTGACAGTATAGGTGCAGATTTATA
TGTACTGCCAGAAACAGATTTAGAAGAAATTTTACGGGAAATAGATTCTCTCAAACCAAACGTGGCGGTGATTGACAGTA
TCCAAACGGTGTTTTTTCCAGCGCTGACTTCTGCACCCGGTTCAGTAGCTCAGGTCCGGGAGTGTACAGCAGCACTGATG
AAGGTGGCGAAACATGAAGATGTCACCATGCTGATTGTGGGACATGTCACCAAAGAAGGAGCGATCGCTGGGCCAAAAGT
TTTAGAACATTTAGTAGATACAGTGTTGTACTTTGAAGGCGATCGCTTTGCCTCCCATCGATTATTACGCACAGTCAAAA
ACCGCTTCGGCGCAACTCACGAAATCGGCATTTTTGAAATGGTGACAGATGGATTGCGAGAAGTCTCCAATCCCTCAGAG
TTATTTTTAGGTAATCGTGACGATCCAGCGCCAGGTACTGCCATTGTCGTGGCTTGCGAAGGTACTCGCCCCATTGTTGT
TGAATTGCAAGCCCTTGTCAGTCCCACCAGCTACCCTTCCCCCCGGCGTGCTGGAACTGGTGTAGACTACAACCGTCTAG
TGCAGATTCTCGCCGTCTTAGAAAAACGGGTGGGAATTCCCATGTCGAAGTTAGATTCCTACGTTGCTTCTGCCGGTGGG
TTGAATGTGGAAGAACCGGCGGTAGATTTAGGAATTGCGATCGCAATTGTTGCCAGTTTCCGCGATCGCATCGTCGATCC
AGGTACAGTATTAATCGGTGAAGTTGGGCTAGGTGGACAAGTGCGATCGGTTTCCCAAATGGAACTGCGGTTAAAAGAAG
CTGCTAAGTTGGGATTTAAAAGAGCGATCGTGCCAAAAGGAACAAAATTCCCCGACTTAAATATTGAAATATTACCCGTC
TCTAAAGTAATAGATGCGATTATCGCTGCCATCCCGCATCAAGAATTGACAGCCGACGATTTAGAACCCGATGAAGATGA
GTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(401-466)

KaiC (ATPase)

(90-295)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2J969

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.507

97.239

0.491
  radA Streptococcus mitis SK321

45.918

96.647

0.444
  radA Streptococcus pneumoniae Rx1

47.436

92.308

0.438
  radA Streptococcus pneumoniae D39

47.436

92.308

0.438
  radA Streptococcus pneumoniae R6

47.436

92.308

0.438
  radA Streptococcus pneumoniae TIGR4

47.436

92.308

0.438
  radA Streptococcus mitis NCTC 12261

47.436

92.308

0.438

Multiple sequence alignment