Detailed information NTG0307916

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AB849_RS08905
• Genome accession: NZ_CP036487
• Coordinates: 1730107..1731189 (+)
• Length: 360 a.a.
• NCBI ID: WP_082240632.1
• Uniprot ID: A0ABS0QGJ9
• Organism: Thermoactinomyces vulgaris strain CDF
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1725107..1736189

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB849_RS08895 (AB849_008895)	ppdK	1725201..1727846 (+)	2646	WP_255347168.1	pyruvate, phosphate dikinase	-
AB849_RS08900 (AB849_008900)	dnaG	1728215..1730050 (+)	1836	WP_049720408.1	DNA primase	-
AB849_RS08905 (AB849_008905)	rpoS	1730107..1731189 (+)	1083	WP_082240632.1	RNA polymerase sigma factor RpoD	Regulator
AB849_RS08910 (AB849_008910)	-	1731394..1732533 (+)	1140	WP_049720341.1	acyl-CoA dehydrogenase	-
AB849_RS08915 (AB849_008915)	-	1732559..1734214 (+)	1656	WP_049720407.1	AMP-binding protein	-
AB849_RS08920 (AB849_008920)	-	1734301..1734915 (+)	615	WP_049720340.1	GNAT family N-acetyltransferase	-
AB849_RS08925 (AB849_008925)	hppD	1734953..1736074 (+)	1122	WP_049720339.1	4-hydroxyphenylpyruvate dioxygenase	-

Sequence

Protein

• Length: 360 a.a.
• Molecular weight: 41467.10 Da
• Isoelectric Point: 4.5140

>NTDB_id=307916 AB849_RS08905 WP_082240632.1 1730107..1731189(+) (rpoS) [Thermoactinomyces vulgaris strain CDF]
MELTLDQAKEQLVEKGKKQGVLSYKMIMEKMSPFDQSSQQMDEFFEHLHDQGIEVVNEEDDSDFDETEVDDEEFVDDDLN
VPPGVKINDPVRMYLKEIGRVPLLTAEEEVELAKRIEQGDEEAKQRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGL
IKAVEKFDFRKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPTPEEIAEEMGLSPE
KVREIMKIAQEPVSLETPIGEEDDSHLGDFIPDDDAQAPADAAAYELLKEQLKDVLDTLSEREENVLRLRFGLDDGRTRT
LEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFLE

Nucleotide

• Length: 1083 bp

>NTDB_id=307916 AB849_RS08905 WP_082240632.1 1730107..1731189(+) (rpoS) [Thermoactinomyces vulgaris strain CDF]
ATGGAACTAACTTTGGATCAAGCCAAAGAACAATTGGTGGAAAAAGGCAAAAAGCAAGGTGTTTTATCTTATAAAATGAT
CATGGAAAAAATGTCTCCTTTCGACCAAAGTTCCCAACAAATGGACGAGTTTTTTGAACACTTGCATGATCAGGGAATCG
AAGTGGTCAATGAAGAAGACGATTCGGATTTTGATGAAACCGAGGTCGATGACGAGGAGTTTGTGGATGATGATTTAAAT
GTTCCGCCGGGAGTTAAAATCAATGACCCTGTCCGGATGTATCTCAAAGAGATTGGCCGTGTTCCTTTGCTGACTGCGGA
AGAAGAAGTCGAATTGGCTAAACGGATTGAACAGGGGGATGAAGAAGCCAAGCAGCGGCTGGCTGAAGCCAACTTGCGCC
TGGTGGTCAGTATCGCCAAGCGGTATGTCGGACGGGGAATGTTGTTCTTGGATTTGATTCAGGAAGGAAATATGGGGCTG
ATTAAAGCCGTTGAAAAGTTTGATTTCCGTAAAGGATTTAAATTCAGCACGTACGCAACCTGGTGGATCCGGCAAGCCAT
CACCCGCGCCATTGCCGATCAGGCCCGCACCATTCGAATCCCGGTTCATATGGTGGAAACCATTAATAAATTGATTCGCG
TGTCCCGTCAATTGTTGCAAGAACTCGGCCGGGAGCCGACACCGGAAGAAATTGCCGAAGAAATGGGTTTAAGCCCTGAA
AAGGTACGGGAAATCATGAAAATTGCCCAAGAACCCGTTTCGTTGGAAACGCCGATCGGAGAAGAAGATGACTCCCATCT
GGGCGATTTCATTCCGGATGATGATGCACAAGCACCAGCGGATGCCGCGGCTTATGAATTGTTGAAAGAACAGTTGAAAG
ATGTGTTGGATACCTTGTCGGAACGGGAAGAAAATGTTTTGCGTTTACGTTTTGGATTGGATGATGGACGCACCCGCACT
TTGGAAGAAGTCGGGAAAGTCTTTGGCGTGACACGGGAACGGATTCGTCAGATTGAAGCCAAAGCACTTCGCAAATTGCG
TCATCCAAGCCGCAGCAAACGTTTAAAAGATTTCCTCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (295-348)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (89-122)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (8-73)

• Sigma-70 region 3 (Sigma70_r3) (206-282)

• Sigma-70 region 2 (Sigma70_r2) (127-196)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	50.193	71.944	0.361