Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AB849_RS08865 Genome accession   NZ_CP036487
Coordinates   1718582..1719328 (+) Length   248 a.a.
NCBI ID   WP_049720345.1    Uniprot ID   A0ABS0QGL5
Organism   Thermoactinomyces vulgaris strain CDF     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1713582..1724328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS08840 (AB849_008840) - 1714017..1716161 (+) 2145 WP_049720347.1 HD family phosphohydrolase -
  AB849_RS08845 (AB849_008845) ybeY 1716158..1716628 (+) 471 WP_037994518.1 rRNA maturation RNase YbeY -
  AB849_RS08850 (AB849_008850) - 1716646..1717335 (+) 690 WP_049720346.1 diacylglycerol kinase -
  AB849_RS08855 (AB849_008855) era 1717437..1718342 (+) 906 WP_037994701.1 GTPase Era -
  AB849_RS08860 (AB849_008860) - 1718425..1718559 (+) 135 WP_082240616.1 YqzL family protein -
  AB849_RS08865 (AB849_008865) recO 1718582..1719328 (+) 747 WP_049720345.1 DNA repair protein RecO Machinery gene
  AB849_RS08870 (AB849_008870) glyQ 1719649..1720536 (+) 888 WP_084712926.1 glycine--tRNA ligase subunit alpha -
  AB849_RS08875 (AB849_008875) glyS 1720533..1722611 (+) 2079 WP_037994511.1 glycine--tRNA ligase subunit beta -
  AB849_RS08880 (AB849_008880) - 1722647..1723555 (-) 909 WP_037994509.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28469.77 Da        Isoelectric Point: 8.3314

>NTDB_id=307915 AB849_RS08865 WP_049720345.1 1718582..1719328(+) (recO) [Thermoactinomyces vulgaris strain CDF]
MLNKYEGIVLKARDYGESHQILTVYTKNQGKVSFMARGSKKTKSRFGAVTEPFTRAHFVSFGNGNIATLSQADLISSHHL
LRSDLLLTSYGAYWLELIDKTTEEKEADPSMYDLLTSLLEHLEQKKDPDILTFILELRVLRTAGYTPETDRCVSCCSGRR
PVRFSIRQGGWLCESCQDQDRDGILVSEASIRILRILQQVDPHRLGKIDVKPETKEQLEKMIRGFVEEYLPVRLKSLQLL
EQFKKIWT

Nucleotide


Download         Length: 747 bp        

>NTDB_id=307915 AB849_RS08865 WP_049720345.1 1718582..1719328(+) (recO) [Thermoactinomyces vulgaris strain CDF]
GTGTTAAACAAATATGAGGGGATTGTCCTGAAAGCTCGCGATTACGGAGAGAGCCATCAAATTCTAACCGTTTATACGAA
AAACCAGGGGAAAGTTTCTTTTATGGCCAGAGGCTCCAAGAAAACGAAAAGCCGTTTTGGAGCCGTGACCGAGCCGTTTA
CCCGGGCTCATTTTGTCAGTTTTGGAAACGGGAACATCGCGACGTTGTCGCAAGCTGATCTCATTTCTTCTCATCATTTA
TTGCGTTCTGATCTCTTGTTGACGTCATATGGCGCCTACTGGCTGGAGTTGATCGACAAAACGACGGAAGAAAAAGAAGC
GGATCCTTCTATGTACGATTTGTTGACCAGCTTGTTGGAGCATTTGGAACAAAAAAAGGACCCTGACATCTTAACCTTTA
TTTTGGAACTCAGAGTGTTGAGGACGGCGGGATACACTCCGGAGACGGACCGGTGTGTTTCTTGTTGTTCCGGACGGCGT
CCTGTCCGTTTCAGTATCCGTCAGGGCGGTTGGTTATGCGAAAGTTGTCAGGATCAGGATCGAGACGGGATTTTGGTATC
GGAGGCAAGCATCCGGATTTTGCGGATCCTGCAACAAGTCGATCCGCACCGGCTCGGTAAAATCGATGTGAAACCGGAGA
CCAAAGAGCAGTTGGAAAAAATGATCCGGGGATTTGTTGAAGAGTATTTGCCGGTCCGGCTGAAATCCTTGCAACTGCTG
GAGCAGTTCAAAAAAATCTGGACGTGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

39.024

99.194

0.387