Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AXA56_RS19555 Genome accession   NZ_CP031609
Coordinates   3921287..3921916 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain N3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3916287..3926916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXA56_RS19540 (AXA56_19540) helD 3916529..3918583 (-) 2055 WP_116836656.1 DNA helicase IV -
  AXA56_RS19545 (AXA56_19545) yccF 3918706..3919152 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AXA56_RS19550 (AXA56_19550) yccS 3919162..3921324 (+) 2163 WP_123000642.1 YccS family putative transporter -
  AXA56_RS19555 (AXA56_19555) sxy/tfoX 3921287..3921916 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AXA56_RS19560 (AXA56_19560) sulA 3922135..3922644 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AXA56_RS19570 (AXA56_19570) ompA 3923001..3924053 (+) 1053 WP_014639122.1 porin OmpA -
  AXA56_RS19575 (AXA56_19575) matP 3924129..3924581 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AXA56_RS19580 (AXA56_19580) ycbZ 3924767..3926527 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=307914 AXA56_RS19555 WP_000839153.1 3921287..3921916(-) (sxy/tfoX) [Escherichia coli strain N3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=307914 AXA56_RS19555 WP_000839153.1 3921287..3921916(-) (sxy/tfoX) [Escherichia coli strain N3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment