Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AB849_RS07135 Genome accession   NZ_CP036487
Coordinates   1394612..1394875 (+) Length   87 a.a.
NCBI ID   WP_037996279.1    Uniprot ID   -
Organism   Thermoactinomyces vulgaris strain CDF     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1389612..1399875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS07120 (AB849_007120) - 1390578..1392518 (+) 1941 WP_049720532.1 AMP-binding protein -
  AB849_RS07125 (AB849_007125) - 1392746..1393453 (+) 708 WP_082240706.1 sigma factor -
  AB849_RS07130 (AB849_007130) - 1393476..1394540 (+) 1065 WP_037996281.1 anti-sigma factor domain-containing protein -
  AB849_RS07135 (AB849_007135) abrB 1394612..1394875 (+) 264 WP_037996279.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AB849_RS07140 (AB849_007140) - 1395030..1395803 (+) 774 WP_037996276.1 enoyl-CoA hydratase-related protein -
  AB849_RS07145 (AB849_007145) - 1395889..1397046 (+) 1158 WP_231855195.1 Leu/Phe/Val dehydrogenase -
  AB849_RS07150 (AB849_007150) pdhA 1397056..1398132 (+) 1077 WP_082240808.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  AB849_RS07155 (AB849_007155) - 1398129..1399106 (+) 978 WP_037998365.1 alpha-ketoacid dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9873.72 Da        Isoelectric Point: 8.1208

>NTDB_id=307908 AB849_RS07135 WP_037996279.1 1394612..1394875(+) (abrB) [Thermoactinomyces vulgaris strain CDF]
MKGTGIVRKVDHLGRIVLPKGLRDLLNIHPSDGVEVFVDDQYIVLKKYEPNCIFCGSLEEVIYYRGKMICKKCVEETSKV
MMKGAPE

Nucleotide


Download         Length: 264 bp        

>NTDB_id=307908 AB849_RS07135 WP_037996279.1 1394612..1394875(+) (abrB) [Thermoactinomyces vulgaris strain CDF]
ATGAAAGGGACTGGGATCGTAAGAAAAGTGGATCATCTGGGAAGGATCGTATTGCCAAAAGGCCTGAGGGATCTTTTGAA
TATTCATCCCAGCGACGGTGTTGAAGTGTTTGTGGATGATCAATATATTGTGCTGAAAAAATACGAGCCCAACTGCATTT
TTTGCGGGAGTCTGGAAGAAGTGATCTACTATCGCGGAAAAATGATTTGCAAAAAATGTGTGGAGGAAACATCCAAAGTG
ATGATGAAAGGAGCGCCTGAGTAA

Domains

Predicted by InterProScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

53.226

71.264

0.379