Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AB849_RS04540 Genome accession   NZ_CP036487
Coordinates   866062..866772 (+) Length   236 a.a.
NCBI ID   WP_121874259.1    Uniprot ID   A0ABS0QFA8
Organism   Thermoactinomyces vulgaris strain CDF     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 861062..871772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS04530 (AB849_004530) - 862764..864341 (+) 1578 WP_049720788.1 PTS transporter subunit EIIC -
  AB849_RS04535 (AB849_004535) treC 864359..866050 (+) 1692 WP_084712962.1 alpha,alpha-phosphotrehalase -
  AB849_RS04540 (AB849_004540) treR 866062..866772 (+) 711 WP_121874259.1 trehalose operon repressor Regulator
  AB849_RS04545 (AB849_004545) - 866943..867752 (-) 810 WP_049720786.1 lipoate--protein ligase family protein -
  AB849_RS04550 (AB849_004550) - 868032..868412 (-) 381 WP_049720784.1 hypothetical protein -
  AB849_RS04555 (AB849_004555) - 868456..868983 (-) 528 WP_037996532.1 NAD(P)H-dependent oxidoreductase -
  AB849_RS04560 (AB849_004560) - 869033..870595 (-) 1563 WP_049720783.1 DHA2 family efflux MFS transporter permease subunit -
  AB849_RS04565 (AB849_004565) - 870634..871269 (-) 636 WP_037996530.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27704.89 Da        Isoelectric Point: 9.2739

>NTDB_id=307890 AB849_RS04540 WP_121874259.1 866062..866772(+) (treR) [Thermoactinomyces vulgaris strain CDF]
MGNIYLTIYHELAEQIEKGKLKPGGKLPSEHDLSKQYQTSRETVRKALNLLSQNGYIQKIKGKGSFVLGIHRYDFPVSGL
VGFKELFSKLNKQWKTHVKKLELKPADPTIHAELGLKRKEPVWEVVRIREVDGEKIILDKDYFRQAYVPELTKEVCQDSI
YEYLEKQCGLSISFAKKVITIEPITEEDRNFLDHQKEPYVAVVRNYVFLEDNTLFQYTESRHLPEKFRFVDFARRH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=307890 AB849_RS04540 WP_121874259.1 866062..866772(+) (treR) [Thermoactinomyces vulgaris strain CDF]
GTGGGAAACATTTATCTGACCATTTACCATGAACTTGCCGAACAAATCGAAAAAGGAAAGTTAAAACCCGGAGGGAAACT
TCCCTCCGAACATGATCTTTCCAAACAATACCAAACCTCTCGTGAAACGGTGCGAAAGGCACTGAACTTGTTGTCCCAAA
ACGGCTATATCCAAAAAATCAAAGGCAAAGGATCTTTTGTGTTGGGAATTCACCGGTACGACTTTCCGGTTTCGGGATTG
GTCGGTTTCAAAGAATTGTTCTCCAAATTAAATAAACAATGGAAGACCCATGTGAAGAAATTGGAATTAAAACCGGCGGA
TCCGACAATCCACGCGGAACTTGGGTTAAAGCGCAAGGAACCGGTTTGGGAAGTTGTCCGGATCCGTGAAGTGGACGGGG
AAAAAATCATTTTGGACAAGGATTACTTCCGACAGGCTTATGTTCCCGAGTTGACCAAAGAAGTCTGCCAAGATTCCATT
TATGAATATCTGGAAAAACAGTGCGGGCTTTCCATCAGCTTTGCCAAAAAAGTCATCACCATCGAACCCATTACGGAAGA
AGACCGGAACTTCCTTGACCATCAAAAAGAGCCTTATGTGGCGGTGGTCCGAAATTATGTCTTTTTGGAGGACAACACGC
TTTTTCAATACACGGAATCCCGCCATCTGCCGGAAAAATTCCGTTTTGTCGACTTTGCAAGGCGTCATTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(5-67)

UTRA domain (UTRA)

(91-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

43.103

98.305

0.424