Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   AB849_RS04335 Genome accession   NZ_CP036487
Coordinates   827446..827676 (-) Length   76 a.a.
NCBI ID   WP_037997983.1    Uniprot ID   A0ABS0QJ89
Organism   Thermoactinomyces vulgaris strain CDF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 822446..832676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS04325 (AB849_004325) - 822797..823801 (-) 1005 WP_037997989.1 peptidylprolyl isomerase -
  AB849_RS04330 (AB849_004330) mfd 823788..827330 (-) 3543 WP_049720802.1 transcription-repair coupling factor -
  AB849_RS04335 (AB849_004335) subA/fin 827446..827676 (-) 231 WP_037997983.1 anti-sigma-F factor Fin family protein Machinery gene
  AB849_RS04340 (AB849_004340) pth 827777..828343 (-) 567 WP_037997980.1 aminoacyl-tRNA hydrolase -
  AB849_RS04345 (AB849_004345) - 828441..829043 (-) 603 WP_049720801.1 50S ribosomal protein L25/general stress protein Ctc -
  AB849_RS04350 (AB849_004350) - 829162..830109 (-) 948 WP_037997977.1 ribose-phosphate diphosphokinase -
  AB849_RS04355 (AB849_004355) glmU 830133..831518 (-) 1386 WP_049720831.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  AB849_RS04360 (AB849_004360) spoVG 831694..831996 (-) 303 WP_037997974.1 septation regulator SpoVG -
  AB849_RS04365 (AB849_004365) - 832107..832484 (-) 378 WP_276319281.1 RidA family protein -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8750.87 Da        Isoelectric Point: 4.7722

>NTDB_id=307886 AB849_RS04335 WP_037997983.1 827446..827676(-) (subA/fin) [Thermoactinomyces vulgaris strain CDF]
MAIHYICRHCQKSIGRIDSSRVTESQLGFDQLTPEEREDIITSDIEGNQVVKVTCESCQQVLEKDPERVLYPSLFH

Nucleotide


Download         Length: 231 bp        

>NTDB_id=307886 AB849_RS04335 WP_037997983.1 827446..827676(-) (subA/fin) [Thermoactinomyces vulgaris strain CDF]
ATGGCCATACATTATATTTGCCGACATTGTCAAAAATCGATCGGAAGAATCGATTCTTCAAGGGTAACCGAATCCCAGTT
GGGGTTTGATCAGTTGACCCCGGAAGAACGGGAAGATATAATAACCAGTGATATTGAAGGAAACCAAGTGGTGAAAGTGA
CTTGTGAGTCATGTCAGCAGGTATTGGAAAAAGATCCGGAACGGGTTTTGTATCCTTCACTCTTTCATTAG

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

41.892

97.368

0.408

Multiple sequence alignment