Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   AB849_RS01920 Genome accession   NZ_CP036487
Coordinates   385526..387661 (+) Length   711 a.a.
NCBI ID   WP_049719691.1    Uniprot ID   A0ABS0QIH1
Organism   Thermoactinomyces vulgaris strain CDF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 380526..392661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS01895 (AB849_001895) - 381382..382458 (-) 1077 WP_049719693.1 WD40/YVTN/BNR-like repeat-containing protein -
  AB849_RS01900 (AB849_001900) - 382692..383084 (-) 393 WP_037994221.1 thioesterase family protein -
  AB849_RS01905 (AB849_001905) - 383229..383834 (-) 606 WP_049719692.1 TetR/AcrR family transcriptional regulator -
  AB849_RS01910 (AB849_001910) - 384088..384303 (+) 216 WP_037994218.1 hypothetical protein -
  AB849_RS01915 (AB849_001915) - 384357..385346 (-) 990 WP_049719722.1 lipoate--protein ligase -
  AB849_RS01920 (AB849_001920) recQ 385526..387661 (+) 2136 WP_049719691.1 DNA helicase RecQ Machinery gene
  AB849_RS01925 (AB849_001925) - 387884..388678 (+) 795 WP_037994216.1 HAD family hydrolase -
  AB849_RS01930 (AB849_001930) rnz 388698..389630 (+) 933 WP_037994214.1 ribonuclease Z -
  AB849_RS01935 (AB849_001935) - 389713..391413 (+) 1701 WP_037994212.1 serine hydrolase -
  AB849_RS01940 (AB849_001940) - 391432..392622 (-) 1191 WP_037994210.1 MFS transporter -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 82189.24 Da        Isoelectric Point: 9.3148

>NTDB_id=307875 AB849_RS01920 WP_049719691.1 385526..387661(+) (recQ) [Thermoactinomyces vulgaris strain CDF]
MSMEQAELLLQKYFGYSSFRSGQKKIIESILSGHHTMGIMPTGGGKSICYQIPALMFPGITLVISPLISLMKDQVDRLRQ
HNISATYINSSLPHAEIKRRMKKLREGVYKLLYIAPERLESLAFQEIFSTLPVYLVTIDEAHCISQWGHDFRPSYRSMAK
QLLSLPRRPLIAALTATATPDVKEDISRLLQIDPSRIYSTRLERPNLSFQVIHEENRLDYIKQYLKDHPRQNGIIYCATR
KDTDHVYEALVQSGFSAAKYHAGLTDEEREKAQEQFSYDRVQTIVATNAFGMGIDKSNVRFVIHYQLPRNLECYYQEAGR
AGRDGEKSECILLFSPQDIPMQRYLIRHSDLSPERKTLEFSKLQKLVNYCHTQRCFQEEIVRYFGADIMQPCGTCGNCRK
KMGDLVNYTIEAQKIFSCIKRLNEQYGLTIIAKVLRGSKNKRLKEWKLDRISTYGTMREYTEKEIQRLCQLLASDGYLSL
VYEGRPYPLVRLTPKAVAVLKGKEPVYLHKETEKWLKTPETKTHRLLDELVSLRKQLSETEKLPPYMIFPDSTLKEMCRR
LPVTEEEMQAISGVGEMKFQKYGAHFLKIIREYVQNHGEKPVREKSTGKPSSHFITYQMFLQGKTIPEIAKERNLTRGTI
EDHLLRAGLEGLELDWDAFIPKEYEALIMEKVEELGAQKLRPIKEALPESVDYMAIKAVIAKRERLQALKK

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=307875 AB849_RS01920 WP_049719691.1 385526..387661(+) (recQ) [Thermoactinomyces vulgaris strain CDF]
ATGTCGATGGAACAAGCGGAATTGTTGTTGCAAAAATACTTTGGTTACTCTTCATTTCGAAGCGGACAAAAGAAAATCAT
CGAAAGCATCTTATCCGGCCACCATACCATGGGGATCATGCCGACCGGAGGCGGAAAATCCATTTGTTATCAGATCCCGG
CTCTTATGTTTCCCGGGATCACGTTGGTGATCTCTCCGTTGATCTCATTGATGAAAGATCAAGTGGACCGTTTGCGCCAG
CACAACATTTCGGCCACCTACATCAACAGTTCGCTTCCGCATGCCGAAATCAAGCGGCGCATGAAAAAGCTGAGAGAAGG
GGTTTACAAACTGCTCTACATCGCTCCGGAACGCTTGGAATCCCTGGCCTTTCAAGAAATTTTCTCCACCCTTCCGGTTT
ATCTGGTCACCATTGATGAAGCCCACTGCATTTCCCAGTGGGGACACGATTTCCGGCCCAGCTACCGGTCCATGGCCAAA
CAACTTTTATCCCTGCCCCGCCGGCCGCTCATTGCCGCTTTAACCGCCACCGCGACGCCGGATGTGAAAGAAGATATTTC
CCGGCTTTTGCAAATCGATCCGTCGCGGATCTATTCCACCCGGTTGGAACGGCCGAATTTGTCCTTTCAAGTCATACACG
AAGAAAACAGGCTGGATTACATCAAGCAATATTTAAAAGACCATCCCCGCCAAAACGGGATCATTTATTGTGCCACCCGC
AAAGATACCGATCATGTCTATGAAGCACTGGTGCAATCCGGCTTTTCCGCAGCCAAGTACCATGCCGGGCTGACCGATGA
AGAAAGAGAAAAAGCACAGGAGCAATTTTCATATGACCGGGTGCAAACCATTGTCGCCACGAATGCCTTTGGCATGGGCA
TCGATAAATCCAATGTCCGGTTTGTCATTCATTATCAATTGCCCCGCAATCTGGAATGTTATTACCAGGAGGCGGGACGA
GCCGGCCGGGACGGGGAAAAAAGCGAATGCATTTTATTGTTTTCGCCGCAAGACATCCCGATGCAACGTTACCTGATCCG
GCATTCCGATCTTTCCCCGGAAAGAAAAACGTTGGAATTCAGCAAGTTGCAAAAGCTGGTCAATTATTGCCATACCCAAC
GGTGTTTTCAAGAGGAAATCGTCCGGTACTTCGGGGCCGACATCATGCAACCATGCGGAACATGCGGAAACTGTCGCAAA
AAAATGGGGGATTTGGTCAATTATACAATTGAAGCACAAAAAATCTTCTCCTGCATCAAACGGTTGAACGAACAGTACGG
ACTCACCATCATCGCAAAAGTCCTCAGGGGTTCCAAAAACAAGCGGCTGAAGGAATGGAAGCTGGACCGGATTTCTACAT
ACGGGACCATGAGGGAGTACACGGAGAAAGAAATCCAGCGGTTGTGCCAACTTTTGGCCTCTGATGGTTATCTCTCCCTG
GTCTACGAAGGGCGCCCTTATCCGCTGGTCCGCCTGACCCCGAAAGCAGTCGCGGTGCTGAAAGGAAAAGAACCGGTTTA
TCTGCACAAAGAGACCGAAAAATGGCTCAAAACCCCCGAAACCAAAACCCACCGCCTCTTGGATGAGCTGGTATCCTTGC
GCAAACAGTTGTCCGAAACCGAAAAACTTCCGCCGTACATGATCTTTCCGGACAGCACTTTAAAAGAGATGTGCCGCCGC
TTGCCCGTCACGGAAGAGGAGATGCAAGCGATCTCCGGGGTCGGGGAAATGAAATTTCAAAAATACGGGGCTCATTTTTT
AAAAATAATCCGGGAATATGTCCAAAATCACGGGGAAAAACCGGTCCGGGAAAAAAGCACGGGAAAACCGTCCAGCCATT
TCATCACTTATCAGATGTTCCTTCAAGGCAAAACCATTCCCGAAATCGCCAAAGAGCGCAACCTGACGCGCGGCACCATC
GAGGATCACTTATTGCGCGCCGGCTTGGAAGGCTTGGAACTCGACTGGGATGCTTTTATTCCCAAAGAATATGAAGCATT
GATCATGGAGAAAGTGGAAGAACTGGGCGCCCAAAAATTGCGCCCCATCAAAGAAGCTTTGCCGGAATCCGTGGATTATA
TGGCCATTAAAGCGGTCATTGCCAAAAGAGAAAGATTGCAAGCTTTGAAAAAATAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(217-324)

DEAD/DEAH box helicase (DEAD)

(22-184)

RQC domain (RQC)

(406-514)

RecQ zinc-binding (RecQ_Zn_bind)

(336-399)

Helix-turn-helix domain (HTH_40)

(612-700)

HRDC domain (HRDC)

(525-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

47.138

83.544

0.394

Multiple sequence alignment