Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EYC12_RS03525 Genome accession   NZ_CP036396
Coordinates   757968..758861 (+) Length   297 a.a.
NCBI ID   WP_000481614.1    Uniprot ID   -
Organism   Helicobacter pylori strain 12C8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 752968..763861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC12_RS03505 - 753829..755145 (+) 1317 WP_262974775.1 MATE family efflux transporter -
  EYC12_RS03510 rny 755146..756657 (-) 1512 WP_262974957.1 ribonuclease Y -
  EYC12_RS03515 - 756635..757306 (-) 672 WP_080020173.1 5-formyltetrahydrofolate cyclo-ligase -
  EYC12_RS03520 - 757404..757961 (+) 558 WP_001220469.1 hypothetical protein -
  EYC12_RS03525 pilA 757968..758861 (+) 894 WP_000481614.1 signal recognition particle-docking protein FtsY Machinery gene
  EYC12_RS03530 - 758871..759182 (-) 312 WP_000678784.1 YkgJ family cysteine cluster protein -
  EYC12_RS03535 - 759240..760292 (-) 1053 Protein_687 glycine zipper family protein -
  EYC12_RS03540 - 760303..761104 (-) 802 Protein_688 hypothetical protein -
  EYC12_RS03545 moaA 761393..762352 (-) 960 WP_033587414.1 GTP 3',8-cyclase MoaA -
  EYC12_RS03550 mobA 762438..763044 (+) 607 Protein_690 molybdenum cofactor guanylyltransferase MobA -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33029.24 Da        Isoelectric Point: 7.4170

>NTDB_id=307722 EYC12_RS03525 WP_000481614.1 757968..758861(+) (pilA) [Helicobacter pylori strain 12C8]
MFNFFKKIVNKIKGEEVKEETKEKKRQSVPKEELEEILIGFDIQYDLIESLLNHLGDSITPKQLEVALLRFVRGESYYDK
TRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSL
AYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKALKNAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV
IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLVDAVFVEQ

Nucleotide


Download         Length: 894 bp        

>NTDB_id=307722 EYC12_RS03525 WP_000481614.1 757968..758861(+) (pilA) [Helicobacter pylori strain 12C8]
ATGTTTAATTTTTTCAAAAAAATTGTCAATAAAATTAAGGGTGAAGAGGTTAAAGAAGAGACTAAAGAAAAAAAGCGCCA
AAGCGTTCCTAAAGAGGAATTAGAAGAAATTTTGATTGGCTTTGATATTCAATACGATTTGATAGAAAGCTTGCTAAATC
ATTTAGGCGATTCAATCACGCCCAAGCAATTAGAAGTCGCTTTGTTGCGTTTCGTGCGTGGGGAAAGCTATTACGATAAA
ACACGCCTAAAAACCATCACCACAAAACCCTTAGTGCATCTCATCGTGGGGGTTAATGGGGCGGGCAAAACCACCACGAT
CGCCAAACTCGCCAAGCTCTCTTTAAAACAACATAAAAAAGCGCTTTTAGGGGCGGGCGATACCTTTAGAGCGGCCGCAG
TCAAACAGCTCCAGTTGTGGGGCGAAAAGCTTAACATTCAAGTCATTAGCGCTAAAGAAGGGAGCGATCCAAGCTCTCTA
GCTTATAACACCATAGAAAGCGCGATCGCTAAAAATATAGATGAAGTTTTTATAGACACCGCCGGGAGGTTACACAACCA
GACCAACCTTAAAAACGAGCTTTCTAAAATCGCACGCACCTGCTCTAAAGCCTTAAAAAACGCCCCCTTTTATAAATTCC
TTATTTTAGATGGCACGCAAGGGAGTTCTGGGCTCACTCAAGCCAAGATTTTCCATGAAACTTTGGCGTTAGACGGCGTG
ATTATGACTAAGCTTGATGGCACTTCTAAAGGCGGAGCGATTTTAAGCGTGCTGTATGAGTTGAAATTACCCATTCTTTA
TTTAGGAATGGGCGAAAAAGAAGACGATTTGATCGCTTTTGATGAAGAACGCTTTATAGAAGACTTGGTTGATGCGGTGT
TTGTGGAACAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(91-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.824

89.899

0.367