Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   DNI88_RS02825 Genome accession   NZ_CP031561
Coordinates   610132..610848 (-) Length   238 a.a.
NCBI ID   WP_020220430.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain AP20     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 605132..615848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNI88_RS02810 (DNI88_02825) - 606637..607584 (+) 948 WP_020220433.1 LacI family DNA-binding transcriptional regulator -
  DNI88_RS02815 (DNI88_02830) - 607640..609124 (+) 1485 WP_020220432.1 sucrose-6-phosphate hydrolase -
  DNI88_RS02820 (DNI88_02835) - 609128..610072 (+) 945 WP_020220431.1 carbohydrate kinase -
  DNI88_RS02825 (DNI88_02840) agrA 610132..610848 (-) 717 WP_020220430.1 quorum-sensing response regulator AgrA Regulator
  DNI88_RS02830 (DNI88_02845) agrC 610862..612154 (-) 1293 WP_063285005.1 quorum-sensing sensor histidine kinase AgrC -
  DNI88_RS02835 (DNI88_02850) agrD 612177..612314 (-) 138 WP_020219911.1 cyclic lactone autoinducer peptide AgrD -
  DNI88_RS02840 (DNI88_02855) - 612316..612882 (-) 567 WP_020219910.1 accessory gene regulator AgrB -
  DNI88_RS13635 (DNI88_02860) - 613273..613350 (+) 78 WP_126511050.1 delta-lysin family phenol-soluble modulin -
  DNI88_RS02850 (DNI88_02865) - 613638..614441 (-) 804 WP_014613416.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28016.18 Da        Isoelectric Point: 5.4368

>NTDB_id=307645 DNI88_RS02825 WP_020220430.1 610132..610848(-) (agrA) [Staphylococcus pseudintermedius strain AP20]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=307645 DNI88_RS02825 WP_020220430.1 610132..610848(-) (agrA) [Staphylococcus pseudintermedius strain AP20]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATTTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGAACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTGT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCAGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGAGCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

82.773

100

0.828

Multiple sequence alignment