Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DYH63_RS18890 Genome accession   NZ_CP031557
Coordinates   4348428..4349789 (+) Length   453 a.a.
NCBI ID   WP_116790278.1    Uniprot ID   -
Organism   Flavobacterium psychrotrophum strain CJ74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4343428..4354789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYH63_RS18860 panD 4343587..4343937 (+) 351 WP_116790274.1 aspartate 1-decarboxylase -
  DYH63_RS18865 - 4343934..4344902 (+) 969 WP_240409036.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  DYH63_RS18870 - 4344948..4346081 (+) 1134 WP_116790275.1 alpha/beta hydrolase -
  DYH63_RS18875 - 4346121..4346630 (-) 510 WP_116790276.1 YgcG family protein -
  DYH63_RS18880 - 4346924..4347199 (-) 276 WP_116790277.1 hypothetical protein -
  DYH63_RS18885 - 4347274..4348171 (-) 898 Protein_3723 Abi family protein -
  DYH63_RS18890 radA 4348428..4349789 (+) 1362 WP_116790278.1 DNA repair protein RadA Machinery gene
  DYH63_RS18895 - 4349794..4351782 (+) 1989 WP_116790279.1 transglycosylase domain-containing protein -
  DYH63_RS18900 - 4352059..4353228 (+) 1170 WP_116790280.1 class I SAM-dependent rRNA methyltransferase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49585.02 Da        Isoelectric Point: 6.1944

>NTDB_id=307620 DYH63_RS18890 WP_116790278.1 4348428..4349789(+) (radA) [Flavobacterium psychrotrophum strain CJ74]
MAKVKTAFYCQNCGTQYSKWQGQCTACREWNTIVEELIVKEDKPGWKASSGDTKKAPKPLRITEIDSASEHRLDTLDGEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLKLPYRTLYVSGEESQKQIKMRAERITATADNCFILTETKTQNIFKQI
EAIDPEVVIIDSIQTLHSDYIESSAGSISQIRETTAELIKFAKESNVPVLLIGHITKDGSIAGPKILEHMVDTVLQFEGD
RNHVYRILRALKNRFGSTAELGIYEMLGSGLREVANPSEILISHKEEDMSGTAIATTMEGMRPLMVEIQALVSTAVYGTP
QRSTTGYNAKRLNMVLAVLEKRAGFRLGAKDVFLNITGGINVDDPAIDLAVVAAILSSNEDIPVDKGYCFAGEIGLSGEV
RPVNRVEQRILEAEKLGFSAIFVSKYNKISLKNTLIDIKLVARIEDVAGHLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=307620 DYH63_RS18890 WP_116790278.1 4348428..4349789(+) (radA) [Flavobacterium psychrotrophum strain CJ74]
ATGGCCAAAGTAAAAACCGCTTTTTATTGCCAGAACTGTGGCACCCAATACTCTAAATGGCAGGGGCAGTGTACCGCCTG
CCGCGAATGGAATACCATAGTTGAAGAACTCATAGTTAAAGAAGATAAACCGGGCTGGAAAGCCTCATCCGGCGATACTA
AAAAAGCGCCAAAGCCACTGCGCATTACAGAGATAGACAGTGCCAGCGAGCATCGCCTTGATACGCTTGATGGCGAACTA
AACCGTGTGCTGGGTGGTGGCCTCGTGCCGGGATCGCTTACACTACTGGGTGGTGAGCCGGGTATAGGCAAGAGTACACT
GCTATTGCAGATATCGCTTAAACTGCCTTACCGCACGCTGTATGTAAGTGGTGAAGAAAGCCAAAAGCAGATAAAAATGC
GTGCAGAACGCATTACGGCTACAGCCGATAATTGCTTTATACTTACCGAAACAAAAACACAAAATATATTTAAGCAGATA
GAAGCGATAGACCCTGAGGTGGTTATTATTGACTCTATACAAACGCTGCATTCAGATTATATAGAATCATCCGCCGGAAG
TATTTCGCAGATACGCGAAACAACTGCCGAGCTTATAAAATTTGCTAAAGAAAGCAATGTGCCGGTACTGCTTATAGGCC
ATATTACAAAAGACGGATCTATTGCCGGGCCAAAAATACTGGAGCATATGGTAGACACCGTGTTACAGTTTGAGGGCGAC
CGCAACCACGTGTACCGCATATTACGGGCATTAAAAAACCGTTTTGGCTCTACGGCAGAACTGGGTATATATGAAATGCT
GGGCAGCGGCCTGCGCGAAGTGGCTAACCCTAGCGAAATATTAATTTCGCATAAAGAAGAAGACATGAGCGGTACAGCCA
TAGCCACAACTATGGAGGGTATGCGCCCGCTAATGGTAGAAATACAGGCACTGGTTAGCACAGCAGTTTATGGTACGCCA
CAGCGCAGTACCACGGGCTACAATGCAAAAAGGCTTAATATGGTGCTTGCCGTTTTAGAAAAGCGTGCGGGTTTTCGCCT
TGGGGCTAAAGACGTGTTTCTTAATATTACAGGTGGTATAAACGTAGACGACCCTGCTATAGACCTTGCCGTGGTAGCTG
CTATTCTATCTTCTAATGAAGATATTCCGGTAGATAAAGGCTACTGCTTTGCAGGCGAAATAGGCCTTAGCGGAGAGGTG
CGCCCGGTAAACCGTGTAGAACAACGCATACTGGAAGCAGAGAAATTAGGTTTTTCTGCTATTTTTGTATCAAAGTACAA
CAAGATATCGTTAAAGAATACTCTAATAGATATAAAACTGGTGGCGCGTATTGAAGATGTAGCCGGCCACCTTTTTGGAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-219)

Subunit ChlI of Mg-chelatase (ChlI)

(335-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

48.791

100

0.49
  radA Streptococcus pneumoniae Rx1

49.664

98.675

0.49
  radA Streptococcus pneumoniae D39

49.664

98.675

0.49
  radA Streptococcus pneumoniae TIGR4

49.664

98.675

0.49
  radA Streptococcus pneumoniae R6

49.664

98.675

0.49
  radA Bacillus subtilis subsp. subtilis str. 168

50.93

94.923

0.483
  radA Streptococcus mitis NCTC 12261

50.82

94.26

0.479

Multiple sequence alignment