Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EYC16_RS06470 Genome accession   NZ_CP036392
Coordinates   1355267..1355734 (+) Length   155 a.a.
NCBI ID   WP_000856783.1    Uniprot ID   -
Organism   Helicobacter pylori strain 48C8     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1350267..1360734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC16_RS06450 grpE 1350417..1350992 (+) 576 WP_000650837.1 nucleotide exchange factor GrpE -
  EYC16_RS06455 dnaK 1351023..1352885 (+) 1863 WP_000521022.1 molecular chaperone DnaK -
  EYC16_RS06460 - 1353141..1354058 (+) 918 WP_001987788.1 PLP-dependent cysteine synthase family protein -
  EYC16_RS06465 - 1354080..1355222 (+) 1143 WP_001242794.1 cystathionine gamma-synthase -
  EYC16_RS06470 luxS 1355267..1355734 (+) 468 WP_000856783.1 S-ribosylhomocysteine lyase Regulator
  EYC16_RS06475 - 1355940..1357625 (+) 1686 WP_317474861.1 5'-nucleotidase C-terminal domain-containing protein -
  EYC16_RS06480 tlpB 1357838..1359535 (+) 1698 WP_000232143.1 methyl-accepting chemotaxis protein TlpB -
  EYC16_RS06485 - 1359567..1360349 (+) 783 WP_000921989.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17662.15 Da        Isoelectric Point: 6.8403

>NTDB_id=307594 EYC16_RS06470 WP_000856783.1 1355267..1355734(+) (luxS) [Helicobacter pylori strain 48C8]
MKTPRMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRLKQPNKDHMDMPSLHSLEHLVAEIIRNHASYVVDWSP
MGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKATEVPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV

Nucleotide


Download         Length: 468 bp        

>NTDB_id=307594 EYC16_RS06470 WP_000856783.1 1355267..1355734(+) (luxS) [Helicobacter pylori strain 48C8]
ATGAAAACGCCAAGAATGAATGTAGAGAGTTTTAATTTGGATCACACCAAAGTCAAAGCCCCTTATGTGCGTATCGCTGA
TCGCAAAAAGGGCGTTAATGGGGATTTGATTGTCAAATACGATGTGCGCCTCAAACAACCCAACAAAGATCACATGGACA
TGCCAAGCTTGCACTCTTTAGAGCATTTAGTCGCTGAGATTATCCGCAACCATGCCAGTTATGTTGTGGATTGGTCGCCT
ATGGGTTGCCAAACAGGATTTTATCTCACGGTGTTAAACCATGACAATTACACAGAGATTTTAGAGGTTTTAGAAAAGAC
GATGCAAGATGTGTTAAAGGCTACAGAAGTGCCTGCCAGCAATGAAAAGCAATGTGGTTGGGCGGCTAACCACACCTTAG
AGGGCGCGCAGAATTTAGCGCGCGCTTTTTTAGATAAACGCGCTGAGTGGTCTGAAGTGGGGGTTTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

40.426

90.968

0.368

Multiple sequence alignment