Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EYC16_RS03530 Genome accession   NZ_CP036392
Coordinates   757957..758850 (+) Length   297 a.a.
NCBI ID   WP_000481614.1    Uniprot ID   -
Organism   Helicobacter pylori strain 48C8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 752957..763850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC16_RS03510 - 753818..755134 (+) 1317 WP_262974775.1 MATE family efflux transporter -
  EYC16_RS03515 rny 755135..756646 (-) 1512 WP_025446973.1 ribonuclease Y -
  EYC16_RS03520 - 756624..757295 (-) 672 WP_080020173.1 5-formyltetrahydrofolate cyclo-ligase -
  EYC16_RS03525 - 757393..757950 (+) 558 WP_001220469.1 hypothetical protein -
  EYC16_RS03530 pilA 757957..758850 (+) 894 WP_000481614.1 signal recognition particle-docking protein FtsY Machinery gene
  EYC16_RS03535 - 758860..759171 (-) 312 WP_000678784.1 YkgJ family cysteine cluster protein -
  EYC16_RS03540 - 759229..760281 (-) 1053 Protein_685 glycine zipper family protein -
  EYC16_RS03545 - 760292..761093 (-) 802 Protein_686 hypothetical protein -
  EYC16_RS03550 moaA 761382..762341 (-) 960 WP_033587414.1 GTP 3',8-cyclase MoaA -
  EYC16_RS03555 mobA 762427..763033 (+) 607 Protein_688 molybdenum cofactor guanylyltransferase MobA -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33029.24 Da        Isoelectric Point: 7.4170

>NTDB_id=307570 EYC16_RS03530 WP_000481614.1 757957..758850(+) (pilA) [Helicobacter pylori strain 48C8]
MFNFFKKIVNKIKGEEVKEETKEKKRQSVPKEELEEILIGFDIQYDLIESLLNHLGDSITPKQLEVALLRFVRGESYYDK
TRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSL
AYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKALKNAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV
IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLVDAVFVEQ

Nucleotide


Download         Length: 894 bp        

>NTDB_id=307570 EYC16_RS03530 WP_000481614.1 757957..758850(+) (pilA) [Helicobacter pylori strain 48C8]
ATGTTTAATTTTTTCAAAAAAATTGTCAATAAAATTAAGGGTGAAGAGGTTAAAGAAGAGACTAAAGAAAAAAAGCGCCA
AAGCGTTCCTAAAGAGGAATTAGAAGAAATTTTGATTGGCTTTGATATTCAATACGATTTGATAGAAAGCTTGCTAAATC
ATTTAGGCGATTCAATCACGCCCAAGCAATTAGAAGTCGCTTTGTTGCGTTTCGTGCGTGGGGAAAGCTATTACGATAAA
ACACGCCTAAAAACCATCACCACAAAACCCTTAGTGCATCTCATCGTGGGGGTTAATGGGGCGGGCAAAACCACCACGAT
CGCCAAACTCGCCAAGCTCTCTTTAAAACAACATAAAAAAGCGCTTTTAGGGGCGGGCGATACCTTTAGAGCGGCCGCAG
TCAAACAGCTCCAGTTGTGGGGCGAAAAGCTTAACATTCAAGTCATTAGCGCTAAAGAAGGGAGCGATCCAAGCTCTCTA
GCTTATAACACCATAGAAAGCGCGATCGCTAAAAATATAGATGAAGTTTTTATAGACACCGCCGGGAGGTTACACAACCA
GACCAACCTTAAAAACGAGCTTTCTAAAATCGCACGCACCTGCTCTAAAGCCTTAAAAAACGCCCCCTTTTATAAATTCC
TTATTTTAGATGGCACGCAAGGGAGTTCTGGGCTCACTCAAGCCAAGATTTTCCATGAAACTTTGGCGTTAGACGGCGTG
ATTATGACTAAGCTTGATGGCACTTCTAAAGGCGGAGCGATTTTAAGCGTGCTGTATGAGTTGAAATTACCCATTCTTTA
TTTAGGAATGGGCGAAAAAGAAGACGATTTGATCGCTTTTGATGAAGAACGCTTTATAGAAGACTTGGTTGATGCGGTGT
TTGTGGAACAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(91-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.824

89.899

0.367

Multiple sequence alignment