Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   DS732_RS09810 Genome accession   NZ_CP031546
Coordinates   1961084..1961713 (+) Length   209 a.a.
NCBI ID   WP_021535003.1    Uniprot ID   -
Organism   Escherichia coli strain cq9     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1956084..1966713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DS732_RS09785 (DS732_09785) ycbZ 1956473..1958233 (-) 1761 WP_000156526.1 Lon protease family protein -
  DS732_RS09790 (DS732_09790) matP 1958419..1958871 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  DS732_RS09795 (DS732_09795) ompA 1958947..1959999 (-) 1053 WP_001361736.1 porin OmpA -
  DS732_RS09805 (DS732_09805) sulA 1960356..1960865 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  DS732_RS09810 (DS732_09810) sxy/tfoX 1961084..1961713 (+) 630 WP_021535003.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  DS732_RS09815 (DS732_09815) yccS 1961676..1963838 (-) 2163 WP_000875044.1 YccS family putative transporter -
  DS732_RS09820 (DS732_09820) yccF 1963848..1964294 (-) 447 WP_001261235.1 YccF domain-containing protein -
  DS732_RS09825 (DS732_09825) helD 1964417..1966471 (+) 2055 WP_000420537.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.06 Da        Isoelectric Point: 9.2180

>NTDB_id=307455 DS732_RS09810 WP_021535003.1 1961084..1961713(+) (sxy/tfoX) [Escherichia coli strain cq9]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLLNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=307455 DS732_RS09810 WP_021535003.1 1961084..1961713(+) (sxy/tfoX) [Escherichia coli strain cq9]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCTCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment