Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DXT74_RS11950 Genome accession   NZ_CP031514
Coordinates   2546246..2547607 (+) Length   453 a.a.
NCBI ID   WP_081556537.1    Uniprot ID   A0A1W0CIP1
Organism   Chromobacterium sp. Rain0013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2541246..2552607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXT74_RS11925 (DXT74_11880) hpnC 2541666..2542478 (+) 813 WP_194426044.1 squalene synthase HpnC -
  DXT74_RS11930 (DXT74_11885) hpnD 2542701..2543546 (+) 846 WP_043639649.1 presqualene diphosphate synthase HpnD -
  DXT74_RS11935 (DXT74_11890) hpnE 2543554..2544822 (+) 1269 WP_194426045.1 hydroxysqualene dehydroxylase HpnE -
  DXT74_RS11940 (DXT74_11895) - 2544883..2545638 (+) 756 WP_043639657.1 SDR family oxidoreductase -
  DXT74_RS11945 (DXT74_11900) - 2545655..2546218 (+) 564 WP_194426046.1 hypothetical protein -
  DXT74_RS11950 (DXT74_11905) radA 2546246..2547607 (+) 1362 WP_081556537.1 DNA repair protein RadA Machinery gene
  DXT74_RS11955 (DXT74_11910) - 2547630..2548190 (+) 561 WP_194426047.1 sigma-70 family RNA polymerase sigma factor -
  DXT74_RS11960 (DXT74_11915) - 2548187..2548366 (+) 180 WP_043639667.1 zf-HC2 domain-containing protein -
  DXT74_RS11965 (DXT74_11920) - 2548487..2548846 (-) 360 WP_081557136.1 DUF2325 domain-containing protein -
  DXT74_RS11970 (DXT74_11925) - 2549806..2552346 (+) 2541 WP_194426048.1 TonB-dependent siderophore receptor -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49007.37 Da        Isoelectric Point: 7.0527

>NTDB_id=307253 DXT74_RS11950 WP_081556537.1 2546246..2547607(+) (radA) [Chromobacterium sp. Rain0013]
MAKIKTVFSCAECGGQTPKWQGQCPHCNAWNTLTEAVQAAPAANARFQSWSDSATQVQKLSDVQTEEVPRDPSGIDELDR
VLGGGVVRGAVILIGGDPGIGKSTLLLQALSEIGARRKVLYVSGEESPQQIALRATRLAVATERVNLLAEIRLEAILETL
KRERPEVAVIDSIQTLYTDQVTSAPGSVSQVRECAAQLTRMAKQTGITILLVGHVTKEGSLAGPRVLEHMVDTVLYFEGD
SHSNYRMIRAIKNRFGAVNELGVFVMTDRGLKGVSNPSAIFLSSYRDDVAGSCVLVTQEGSRPLLVEIQALVDDCHGFQP
KRLTVGLEQNRLAMLLAVLHRHGGVACFDQDVFLNAVGGVKINEPAADLAIILAMVSSLRNRALPEKLVVFGEVGLAGEV
RPVARGQERLKEAAKLGFTRAIVPQANRPRQPIEGLQVIAVERLDQAVEFCRE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=307253 DXT74_RS11950 WP_081556537.1 2546246..2547607(+) (radA) [Chromobacterium sp. Rain0013]
ATGGCAAAAATCAAAACCGTTTTCAGTTGCGCCGAGTGCGGCGGTCAAACGCCCAAATGGCAGGGCCAGTGCCCGCATTG
CAACGCCTGGAACACCTTGACCGAGGCGGTGCAGGCCGCGCCGGCGGCCAACGCCCGTTTCCAGTCCTGGAGCGACAGCG
CCACCCAAGTGCAGAAGCTGTCCGATGTGCAAACCGAGGAAGTGCCGCGGGACCCGTCCGGCATCGACGAGCTGGACCGG
GTGCTGGGCGGCGGCGTGGTGCGCGGCGCGGTGATTCTGATTGGCGGCGATCCCGGCATCGGCAAATCCACGCTGTTGTT
GCAGGCGCTGTCCGAGATTGGCGCGCGCCGCAAGGTGCTCTACGTGTCCGGCGAGGAATCGCCGCAGCAGATCGCGCTGC
GCGCGACCCGGCTGGCGGTAGCCACCGAGCGCGTTAACCTGCTGGCGGAAATCCGGCTGGAAGCCATCCTGGAAACGTTG
AAGCGCGAGCGGCCGGAAGTGGCGGTGATCGACTCCATCCAGACCCTGTACACCGACCAAGTGACGTCGGCGCCGGGCTC
GGTGTCCCAGGTGCGCGAATGCGCGGCGCAACTGACGCGGATGGCCAAGCAGACCGGCATCACCATATTGCTGGTGGGAC
ACGTCACCAAGGAAGGTTCGCTGGCCGGCCCGCGCGTGCTGGAGCATATGGTGGACACCGTGCTGTATTTCGAGGGCGAT
TCCCACTCCAATTACCGGATGATACGCGCGATCAAAAACCGTTTCGGCGCGGTCAACGAGTTGGGCGTGTTCGTGATGAC
GGACCGCGGCCTCAAGGGCGTGTCCAACCCCTCCGCCATCTTTCTGTCTTCCTACCGGGACGACGTGGCCGGCTCCTGCG
TGCTGGTCACCCAGGAGGGCAGCCGCCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGACGATTGTCACGGCTTCCAGCCC
AAGCGCCTGACCGTGGGTCTGGAGCAGAACCGCCTGGCCATGCTGCTGGCGGTGTTGCACCGCCATGGCGGCGTCGCCTG
CTTCGACCAGGACGTGTTCCTCAACGCGGTGGGCGGGGTCAAGATCAACGAGCCGGCGGCCGACTTGGCCATCATCCTGG
CCATGGTGTCCTCCCTGCGCAATCGGGCGTTGCCGGAAAAACTGGTGGTGTTCGGCGAAGTGGGCCTGGCGGGCGAGGTG
CGCCCGGTGGCGCGCGGCCAGGAGCGCTTGAAGGAAGCGGCCAAGCTCGGATTTACCCGCGCCATCGTGCCGCAGGCCAA
CCGCCCGCGCCAGCCGATTGAGGGGTTGCAGGTGATTGCGGTGGAGCGGCTGGATCAGGCGGTGGAGTTCTGCCGCGAGT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(358-448)

AAA domain (AAA_25)

(68-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W0CIP1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.453

100

0.499
  radA Streptococcus mitis SK321

47.007

99.558

0.468
  radA Streptococcus mitis NCTC 12261

46.889

99.338

0.466
  radA Streptococcus pneumoniae TIGR4

48.471

93.819

0.455
  radA Streptococcus pneumoniae Rx1

48.471

93.819

0.455
  radA Streptococcus pneumoniae D39

48.471

93.819

0.455
  radA Streptococcus pneumoniae R6

48.471

93.819

0.455

Multiple sequence alignment