Detailed information NTG0307168

Bioinformatically predicted

Overview

• Name: pilV
• Type: Machinery gene
• Locus tag: DXG80_RS12415
• Genome accession: NZ_CP031500
• Coordinates: 2397806..2398282 (-)
• Length: 158 a.a.
• NCBI ID: WP_034349477.1
• Uniprot ID: -
• Organism: Deinococcus radiodurans strain R1 dM1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2380842..2399238	2397806..2398282	within	0
IS/Tn	2398426..2399238	2397806..2398282	flank	144

Gene organization within MGE regions

Location: 2380842..2399238

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DXG80_RS12345 (DXG80_12370)	-	2380842..2382944 (-)	2103	WP_010887179.1	protein kinase domain-containing protein	-
DXG80_RS12350 (DXG80_12375)	-	2382913..2385507 (-)	2595	WP_027479533.1	hypothetical protein	-
DXG80_RS12355 (DXG80_12380)	-	2385511..2386116 (-)	606	WP_010887181.1	OmpA family protein	-
DXG80_RS12360 (DXG80_12385)	-	2386141..2387211 (-)	1071	WP_227085990.1	hypothetical protein	-
DXG80_RS12365 (DXG80_12390)	-	2387380..2390580 (-)	3201	WP_227085991.1	tubulin-like doman-containing protein	-
DXG80_RS12370 (DXG80_12395)	-	2390592..2390921 (-)	330	WP_010887184.1	hypothetical protein	-
DXG80_RS12375 (DXG80_12400)	-	2390921..2392240 (-)	1320	WP_162177565.1	hypothetical protein	-
DXG80_RS12380 (DXG80_12405)	-	2392451..2393245 (-)	795	WP_034349478.1	DUF72 domain-containing protein	-
DXG80_RS12385 (DXG80_12410)	-	2393270..2393947 (-)	678	WP_010887187.1	glycerophosphodiester phosphodiesterase	-
DXG80_RS12390 (DXG80_12415)	-	2394052..2394735 (+)	684	WP_010887188.1	SDR family oxidoreductase	-
DXG80_RS12395 (DXG80_12420)	-	2394812..2395579 (+)	768	WP_010887189.1	sulfite exporter TauE/SafE family protein	-
DXG80_RS12400 (DXG80_12425)	-	2395576..2395851 (+)	276	WP_027479532.1	hypothetical protein	-
DXG80_RS12405 (DXG80_12430)	-	2395835..2396212 (-)	378	WP_010887191.1	type IV pilin protein	-
DXG80_RS12410 (DXG80_12435)	-	2396579..2397763 (+)	1185	WP_162177563.1	HTTM domain-containing protein	-
DXG80_RS12415 (DXG80_12440)	pilV	2397806..2398282 (-)	477	WP_034349477.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
DXG80_RS12420 (DXG80_12445)	-	2398426..2399238 (-)	813	WP_010884088.1	IS5-like element ISDra5 family transposase	-

Sequence

Protein

• Length: 158 a.a.
• Molecular weight: 15369.17 Da
• Isoelectric Point: 7.5899

>NTDB_id=307168 DXG80_RS12415 WP_034349477.1 2397806..2398282(-) (pilV) [Deinococcus radiodurans strain R1 dM1]
MKNTTQGFTLIELLIVIAIIGILAAVLIPNLLGARAKANDSATQSYIRNCYTAVEVARGADGRLPAAGNCDSTANLGTNA
VATPGAITAAGAYSLDGTGSKFAVTATSVTNKTFCFDGAKMGEGTGATGACTFSTSTGTGTGTGTGTGTGTGTGTGSN

Nucleotide

• Length: 477 bp

>NTDB_id=307168 DXG80_RS12415 WP_034349477.1 2397806..2398282(-) (pilV) [Deinococcus radiodurans strain R1 dM1]
ATGAAGAACACCACCCAAGGCTTCACCCTGATCGAACTGCTCATCGTCATCGCCATCATCGGCATCCTGGCCGCCGTGTT
GATCCCCAACCTGCTGGGCGCCCGCGCCAAGGCCAACGACAGCGCCACCCAGAGCTACATCCGCAACTGCTACACCGCCG
TGGAAGTGGCCCGTGGTGCTGACGGCCGCCTGCCTGCTGCTGGCAACTGCGACAGCACGGCCAACCTGGGTACCAACGCT
GTGGCTACCCCTGGTGCAATCACTGCGGCAGGCGCTTACAGCCTGGATGGTACTGGTAGCAAGTTTGCCGTTACTGCCAC
CAGCGTGACCAACAAGACCTTCTGCTTCGACGGCGCGAAGATGGGCGAAGGCACTGGCGCTACTGGTGCCTGCACCTTCA
GCACCAGCACCGGCACCGGCACTGGTACCGGCACTGGTACCGGCACTGGCACCGGCACTGGTACCGGCAGCAACTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-27)

• Pilin A4 (PilA4) (39-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilV	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	100	100	1