Detailed information
Bioinformatically predicted
Overview
| Name | ddrB | Type | Machinery gene |
| Locus tag | DXG80_RS09950 | Genome accession | NZ_CP031500 |
| Coordinates | 1911747..1912313 (+) | Length | 188 a.a. |
| NCBI ID | WP_027480237.1 | Uniprot ID | - |
| Organism | Deinococcus radiodurans strain R1 dM1 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1906747..1917313
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXG80_RS09930 (DXG80_09945) | - | 1909066..1909854 (-) | 789 | WP_027480238.1 | APH(3') family aminoglycoside O-phosphotransferase | - |
| DXG80_RS09935 (DXG80_09950) | - | 1909894..1910823 (+) | 930 | WP_010886715.1 | hypothetical protein | - |
| DXG80_RS09940 (DXG80_09955) | - | 1910820..1911194 (+) | 375 | WP_010886716.1 | hypothetical protein | - |
| DXG80_RS09945 (DXG80_09960) | - | 1911296..1911658 (+) | 363 | WP_010886717.1 | hypothetical protein | - |
| DXG80_RS09950 (DXG80_09965) | ddrB | 1911747..1912313 (+) | 567 | WP_027480237.1 | single-stranded DNA-binding protein DdrB | Machinery gene |
| DXG80_RS09955 (DXG80_09970) | - | 1912494..1914431 (-) | 1938 | WP_034350791.1 | peptidylprolyl isomerase | - |
| DXG80_RS09965 (DXG80_09980) | - | 1914803..1915282 (+) | 480 | WP_027480236.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 188 a.a. Molecular weight: 20830.32 Da Isoelectric Point: 9.2754
>NTDB_id=307165 DXG80_RS09950 WP_027480237.1 1911747..1912313(+) (ddrB) [Deinococcus radiodurans strain R1 dM1]
MLQIEFITDLGARVTVNVEHESRLLDVQRHYGRLGWTSGEIPSGGYQFPIENEADFDWSLIGARKWKSPEGEELVIHRGH
AYRRRELEAVDSRKLKLPAAIKYSRGAKVSDPQHVREKADGDIEYVSLAIFRGGKRQERYAVPGGAAGNGQGRPAPQGQP
AQARPQATAARPAARPPVQPGQEEETPF
MLQIEFITDLGARVTVNVEHESRLLDVQRHYGRLGWTSGEIPSGGYQFPIENEADFDWSLIGARKWKSPEGEELVIHRGH
AYRRRELEAVDSRKLKLPAAIKYSRGAKVSDPQHVREKADGDIEYVSLAIFRGGKRQERYAVPGGAAGNGQGRPAPQGQP
AQARPQATAARPAARPPVQPGQEEETPF
Nucleotide
Download Length: 567 bp
>NTDB_id=307165 DXG80_RS09950 WP_027480237.1 1911747..1912313(+) (ddrB) [Deinococcus radiodurans strain R1 dM1]
ATGTTGCAGATTGAATTTATCACCGACCTGGGTGCGCGGGTCACGGTGAACGTGGAGCATGAAAGCCGGTTGCTGGACGT
ACAGCGCCACTATGGCCGCCTGGGCTGGACCAGCGGCGAGATTCCGTCCGGGGGCTACCAGTTTCCCATCGAGAACGAGG
CCGACTTCGACTGGTCGCTGATCGGCGCCCGCAAGTGGAAGAGCCCCGAGGGCGAAGAACTCGTCATTCACCGGGGCCAC
GCCTACCGCCGCCGCGAACTCGAAGCCGTGGACAGCCGCAAGCTCAAGCTGCCTGCCGCCATCAAGTACAGCCGCGGCGC
CAAGGTCAGCGACCCGCAGCACGTGCGCGAAAAGGCCGATGGCGACATCGAATACGTCAGCCTCGCCATCTTCCGCGGTG
GCAAGCGGCAGGAGCGCTACGCGGTGCCCGGCGGCGCGGCGGGGAACGGTCAGGGTCGCCCGGCGCCCCAGGGACAGCCC
GCCCAGGCCCGTCCCCAGGCCACTGCCGCTCGCCCCGCCGCTCGGCCCCCGGTGCAGCCCGGTCAGGAAGAAGAAACGCC
GTTCTGA
ATGTTGCAGATTGAATTTATCACCGACCTGGGTGCGCGGGTCACGGTGAACGTGGAGCATGAAAGCCGGTTGCTGGACGT
ACAGCGCCACTATGGCCGCCTGGGCTGGACCAGCGGCGAGATTCCGTCCGGGGGCTACCAGTTTCCCATCGAGAACGAGG
CCGACTTCGACTGGTCGCTGATCGGCGCCCGCAAGTGGAAGAGCCCCGAGGGCGAAGAACTCGTCATTCACCGGGGCCAC
GCCTACCGCCGCCGCGAACTCGAAGCCGTGGACAGCCGCAAGCTCAAGCTGCCTGCCGCCATCAAGTACAGCCGCGGCGC
CAAGGTCAGCGACCCGCAGCACGTGCGCGAAAAGGCCGATGGCGACATCGAATACGTCAGCCTCGCCATCTTCCGCGGTG
GCAAGCGGCAGGAGCGCTACGCGGTGCCCGGCGGCGCGGCGGGGAACGGTCAGGGTCGCCCGGCGCCCCAGGGACAGCCC
GCCCAGGCCCGTCCCCAGGCCACTGCCGCTCGCCCCGCCGCTCGGCCCCCGGTGCAGCCCGGTCAGGAAGAAGAAACGCC
GTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ddrB | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
100 |
100 |
1 |