Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | DXG80_RS02320 | Genome accession | NZ_CP031500 |
| Coordinates | 444213..444653 (+) | Length | 146 a.a. |
| NCBI ID | WP_227086020.1 | Uniprot ID | - |
| Organism | Deinococcus radiodurans strain R1 dM1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 439213..449653
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXG80_RS02310 (DXG80_02310) | - | 441045..441791 (-) | 747 | WP_373969211.1 | DUF4388 domain-containing protein | - |
| DXG80_RS02315 (DXG80_02315) | - | 441934..444192 (+) | 2259 | WP_162177751.1 | hypothetical protein | - |
| DXG80_RS02320 (DXG80_02320) | pilV | 444213..444653 (+) | 441 | WP_227086020.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| DXG80_RS02325 (DXG80_02325) | - | 444654..445214 (+) | 561 | WP_010887876.1 | type II secretion system protein | - |
| DXG80_RS02330 (DXG80_02330) | - | 445265..446095 (+) | 831 | WP_233454352.1 | PilW family protein | - |
| DXG80_RS02335 (DXG80_02335) | - | 446157..447881 (+) | 1725 | WP_027480202.1 | dynamin family protein | - |
| DXG80_RS02340 (DXG80_02340) | - | 447957..448868 (+) | 912 | WP_034350720.1 | cation diffusion facilitator family transporter | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 15543.03 Da Isoelectric Point: 9.4951
>NTDB_id=307153 DXG80_RS02320 WP_227086020.1 444213..444653(+) (pilV) [Deinococcus radiodurans strain R1 dM1]
MTLIELLVVIAIIGILMGLFGWNLVRSIRAAELREAATQVAVDLRQARSQAQRGSRDIVVVLPGSTGGTTYRFDTDVKTI
PNNVQLICKSNCGTGTTTNITYQAPYGELGAIGSIYTVRSPMNGIGDYEIRIVGVTGKVILAKAGS
MTLIELLVVIAIIGILMGLFGWNLVRSIRAAELREAATQVAVDLRQARSQAQRGSRDIVVVLPGSTGGTTYRFDTDVKTI
PNNVQLICKSNCGTGTTTNITYQAPYGELGAIGSIYTVRSPMNGIGDYEIRIVGVTGKVILAKAGS
Nucleotide
Download Length: 441 bp
>NTDB_id=307153 DXG80_RS02320 WP_227086020.1 444213..444653(+) (pilV) [Deinococcus radiodurans strain R1 dM1]
ATGACTCTTATTGAACTGCTGGTTGTCATAGCGATCATCGGTATTTTGATGGGTCTGTTCGGCTGGAATCTTGTGCGAAG
CATTCGGGCTGCCGAGCTGCGGGAAGCGGCGACTCAGGTGGCGGTGGATCTACGCCAGGCGCGCTCGCAGGCGCAGCGGG
GCAGCAGAGATATTGTTGTCGTGTTGCCGGGGAGTACAGGCGGAACCACCTATAGGTTCGACACGGACGTTAAAACCATT
CCCAACAATGTGCAGCTGATCTGCAAATCGAATTGCGGCACCGGCACGACGACGAACATCACTTATCAGGCACCGTACGG
CGAATTGGGCGCTATAGGGAGCATCTATACCGTCAGGAGCCCCATGAACGGAATTGGCGATTATGAAATCAGAATCGTGG
GCGTAACCGGCAAAGTCATTCTTGCTAAAGCGGGGTCCTGA
ATGACTCTTATTGAACTGCTGGTTGTCATAGCGATCATCGGTATTTTGATGGGTCTGTTCGGCTGGAATCTTGTGCGAAG
CATTCGGGCTGCCGAGCTGCGGGAAGCGGCGACTCAGGTGGCGGTGGATCTACGCCAGGCGCGCTCGCAGGCGCAGCGGG
GCAGCAGAGATATTGTTGTCGTGTTGCCGGGGAGTACAGGCGGAACCACCTATAGGTTCGACACGGACGTTAAAACCATT
CCCAACAATGTGCAGCTGATCTGCAAATCGAATTGCGGCACCGGCACGACGACGAACATCACTTATCAGGCACCGTACGG
CGAATTGGGCGCTATAGGGAGCATCTATACCGTCAGGAGCCCCATGAACGGAATTGGCGATTATGAAATCAGAATCGTGG
GCGTAACCGGCAAAGTCATTCTTGCTAAAGCGGGGTCCTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
100 |
100 |
1 |