Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SDEG_RS09630 Genome accession   NC_012891
Coordinates   1910170..1911879 (-) Length   569 a.a.
NCBI ID   WP_012767577.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1905170..1916879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS09610 (SDEG_1973) radA 1905502..1906863 (-) 1362 WP_037589774.1 DNA repair protein RadA Machinery gene
  SDEG_RS09615 (SDEG_1974) - 1906946..1907392 (-) 447 WP_003053378.1 dUTP diphosphatase -
  SDEG_RS09620 (SDEG_1975) - 1907500..1908267 (-) 768 WP_012767575.1 epoxyqueuosine reductase QueH -
  SDEG_RS09625 (SDEG_1976) - 1908386..1910170 (-) 1785 WP_012767576.1 ABC transporter ATP-binding protein -
  SDEG_RS09630 (SDEG_1977) rcrP 1910170..1911879 (-) 1710 WP_012767577.1 ABC transporter ATP-binding protein Regulator
  SDEG_RS09635 (SDEG_1978) rcrR 1911872..1912321 (-) 450 WP_003053369.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SDEG_RS09640 (SDEG_1979) - 1912522..1913538 (+) 1017 WP_003053365.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SDEG_RS09645 (SDEG_1980) hasC 1913570..1914472 (+) 903 WP_003053363.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  SDEG_RS09650 (SDEG_1981) - 1914653..1915279 (+) 627 WP_012767578.1 DUF6198 family protein -
  SDEG_RS09655 (SDEG_1982) - 1915456..1916130 (-) 675 WP_003053389.1 rhomboid family intramembrane serine protease -
  SDEG_RS09660 (SDEG_1983) - 1916127..1916654 (-) 528 WP_012767579.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 63379.01 Da        Isoelectric Point: 5.9536

>NTDB_id=30713 SDEG_RS09630 WP_012767577.1 1910170..1911879(-) (rcrP) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MLKEAILRYKWYALGSLIMIIGVVASSLLQPHYLKDVLSAVIQNNQDKIYNVGILLLIIALMGLIAGAVNTILAAKIAQG
VSADIREKTFRKIQSFSYANVEAFNAGNLVVRMTNDINQIQNLVMMLFQVLFRLPILFIGAFIMAVQTLPDLWWVIVLMV
ILIGLIMALVMSQMGPRFGKFQKLMDKINRIAKENLRGVRVVKSFVQEREQYAKFKETSNELLDLNLFIGYGFSLMQPAL
MLVSYLAVYVSIYMVSGMVETDPTVIGNIASFMTYMMQIMFSIIMVGFMGMQASRAFVSIGRLKEVLNTESTMTFDTEQE
EEVSGSIVFEDVSFTYPNDDEPTLRHISFRIEPGQMVGVVGATGAGKSTLAQLIPRLFDPQEGQILLGGKPIKSFSQATL
RQTVSIVLQKAILFSGTIADNLRQGSATADDYAMERAARIAQAKEFIDRMDDRYESQVEERGNNFSGGQKQRMSIARGVI
NQPKILVLDDSTSALDAKSERLVQEALNKELKETTTVIIAQKISSVVKADKILVLDQGQLIGEGTHAELVANNAIYREIY
ETQKGKEED

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=30713 SDEG_RS09630 WP_012767577.1 1910170..1911879(-) (rcrP) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGCTTAAAGAAGCGATTTTGCGTTACAAATGGTACGCATTGGGCTCGCTCATCATGATTATTGGGGTGGTAGCGAGCAG
TTTGCTTCAGCCTCATTATTTAAAAGATGTGCTGAGTGCTGTTATTCAAAATAACCAAGATAAGATTTACAATGTGGGGA
TATTGTTGCTTATCATTGCGCTGATGGGATTGATTGCAGGGGCAGTTAATACTATTTTAGCTGCTAAGATTGCTCAAGGG
GTCTCAGCGGATATTCGTGAGAAGACCTTCCGAAAAATTCAGAGTTTTTCTTATGCCAATGTAGAAGCTTTCAATGCTGG
GAACCTCGTGGTTCGGATGACCAATGATATTAATCAAATTCAAAATTTGGTAATGATGCTGTTTCAAGTGCTTTTTCGTC
TGCCGATTCTCTTTATTGGAGCTTTTATCATGGCGGTGCAGACCCTACCTGACTTGTGGTGGGTGATTGTGCTGATGGTT
ATTTTAATTGGTCTTATCATGGCTTTGGTCATGAGTCAGATGGGCCCACGTTTTGGGAAATTCCAAAAGTTGATGGACAA
GATCAATCGAATTGCTAAGGAAAATCTTCGTGGCGTGCGTGTGGTTAAATCTTTTGTGCAAGAACGGGAACAATATGCCA
AATTTAAAGAAACGTCCAATGAACTATTAGATTTGAATCTCTTTATCGGCTACGGTTTTTCGTTGATGCAACCTGCTTTA
ATGTTGGTATCTTATTTGGCAGTGTACGTGTCCATCTATATGGTTTCAGGCATGGTTGAAACAGATCCTACCGTTATTGG
GAATATTGCTTCTTTCATGACTTATATGATGCAAATCATGTTTTCAATTATCATGGTCGGCTTTATGGGCATGCAAGCAA
GTCGTGCCTTTGTCTCTATTGGTCGTCTCAAAGAGGTGCTCAATACTGAGTCAACCATGACCTTTGACACCGAGCAAGAA
GAAGAGGTTTCAGGTAGTATTGTCTTTGAGGATGTCAGCTTTACTTATCCTAATGATGATGAGCCGACCTTACGCCATAT
TTCCTTTAGGATTGAACCTGGTCAAATGGTTGGTGTTGTCGGTGCTACTGGTGCTGGGAAGTCTACACTGGCACAGCTTA
TTCCGCGCTTGTTTGACCCGCAAGAAGGTCAAATCTTGCTGGGAGGCAAACCGATTAAATCCTTCAGCCAAGCGACTCTT
CGTCAAACGGTTTCTATCGTGTTGCAAAAGGCTATTCTTTTTTCGGGAACCATTGCAGACAATCTCCGTCAAGGATCAGC
AACTGCAGATGATTATGCCATGGAACGAGCAGCGCGTATTGCTCAAGCCAAAGAATTTATCGATCGTATGGATGACCGCT
ATGAAAGCCAAGTGGAAGAACGGGGCAATAACTTCTCTGGTGGTCAAAAACAACGGATGTCGATTGCGCGTGGTGTCATT
AACCAACCTAAGATTCTTGTATTGGATGACTCAACCTCGGCTCTGGATGCCAAGTCAGAAAGATTAGTTCAAGAAGCCTT
GAATAAAGAGTTGAAAGAGACCACCACAGTGATCATTGCCCAAAAAATTTCGTCAGTGGTAAAGGCTGATAAGATTTTAG
TTCTCGATCAGGGCCAACTGATTGGCGAAGGAACTCATGCTGAGTTGGTAGCTAATAATGCGATTTATCGTGAAATTTAT
GAGACCCAAAAAGGGAAGGAGGAAGACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(344-493)

ABC transporter transmembrane region (ABC_membrane)

(16-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

34.915

100

0.362

Multiple sequence alignment