Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SDEG_RS09635 Genome accession   NC_012891
Coordinates   1911872..1912321 (-) Length   149 a.a.
NCBI ID   WP_003053369.1    Uniprot ID   A0ABU0A4B8
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1906872..1917321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS09615 (SDEG_1974) - 1906946..1907392 (-) 447 WP_003053378.1 dUTP diphosphatase -
  SDEG_RS09620 (SDEG_1975) - 1907500..1908267 (-) 768 WP_012767575.1 epoxyqueuosine reductase QueH -
  SDEG_RS09625 (SDEG_1976) - 1908386..1910170 (-) 1785 WP_012767576.1 ABC transporter ATP-binding protein -
  SDEG_RS09630 (SDEG_1977) rcrP 1910170..1911879 (-) 1710 WP_012767577.1 ABC transporter ATP-binding protein Regulator
  SDEG_RS09635 (SDEG_1978) rcrR 1911872..1912321 (-) 450 WP_003053369.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SDEG_RS09640 (SDEG_1979) - 1912522..1913538 (+) 1017 WP_003053365.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SDEG_RS09645 (SDEG_1980) hasC 1913570..1914472 (+) 903 WP_003053363.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  SDEG_RS09650 (SDEG_1981) - 1914653..1915279 (+) 627 WP_012767578.1 DUF6198 family protein -
  SDEG_RS09655 (SDEG_1982) - 1915456..1916130 (-) 675 WP_003053389.1 rhomboid family intramembrane serine protease -
  SDEG_RS09660 (SDEG_1983) - 1916127..1916654 (-) 528 WP_012767579.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17415.30 Da        Isoelectric Point: 9.5972

>NTDB_id=30714 SDEG_RS09635 WP_003053369.1 1911872..1912321(-) (rcrR) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MSRVIADLRELTHQVEQISDEIAKKYDLEHLAGPQGHVLVFLSKHQDQEIFVKDIEKELQISKSVTSNLVKRMVKNGFIK
VLPSQVDKRYKQVILAKAGREKLPLLQECRKDIEHYFFKEITREELLTVKKVIQQLKQNMLTYKGENDA

Nucleotide


Download         Length: 450 bp        

>NTDB_id=30714 SDEG_RS09635 WP_003053369.1 1911872..1912321(-) (rcrR) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGTCACGAGTAATTGCAGATTTGCGTGAGTTGACACATCAGGTTGAACAAATTAGCGATGAAATTGCAAAGAAATATGA
CCTTGAACATTTAGCAGGACCCCAGGGACACGTTTTGGTTTTTCTATCCAAGCATCAAGATCAAGAAATTTTTGTGAAGG
ACATTGAAAAAGAACTCCAAATTTCAAAATCAGTTACCAGTAATCTTGTTAAACGCATGGTTAAAAATGGTTTTATTAAG
GTTCTTCCTTCCCAAGTAGACAAGCGCTACAAGCAAGTCATTTTGGCTAAGGCAGGACGAGAGAAGCTGCCTTTGTTGCA
AGAATGTCGCAAGGATATTGAACATTATTTCTTTAAAGAAATCACGAGAGAGGAGTTGCTGACGGTTAAAAAGGTGATTC
AGCAGCTTAAGCAAAATATGCTAACTTATAAAGGAGAGAACGATGCTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

45.714

93.96

0.43

Multiple sequence alignment