Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DXX82_RS02360 Genome accession   NZ_CP031477
Coordinates   503597..504550 (-) Length   317 a.a.
NCBI ID   WP_115911259.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 498597..509550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS02340 - 499899..500849 (-) 951 WP_115911253.1 sigma 54-interacting transcriptional regulator -
  DXX82_RS02345 - 500970..501878 (-) 909 WP_115911255.1 siderophore ABC transporter substrate-binding protein -
  DXX82_RS02350 - 501893..502654 (-) 762 WP_049376467.1 ATP-binding cassette domain-containing protein -
  DXX82_RS02355 - 502645..503604 (-) 960 WP_115911257.1 iron chelate uptake ABC transporter family permease subunit -
  DXX82_RS02360 ceuB 503597..504550 (-) 954 WP_115911259.1 ABC transporter permease Machinery gene
  DXX82_RS02365 mepM 504684..506159 (-) 1476 WP_115911261.1 murein DD-endopeptidase MepM -
  DXX82_RS02370 znuC 506338..507132 (+) 795 WP_049380442.1 zinc ABC transporter ATP-binding protein ZnuC -
  DXX82_RS02375 znuB 507142..507927 (+) 786 WP_115911263.1 zinc ABC transporter permease subunit ZnuB -
  DXX82_RS02380 accA 508015..508962 (+) 948 WP_115911265.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35044.23 Da        Isoelectric Point: 10.2040

>NTDB_id=307121 DXX82_RS02360 WP_115911259.1 503597..504550(-) (ceuB) [Haemophilus parainfluenzae strain M27794]
MIKRRYLIFLLIVLSFVSLFLGVSTINLQGLLNFEGNQWQIFFISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILMAMLFFPTASMLLKTTIAVIVSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFTHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSAG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=307121 DXX82_RS02360 WP_115911259.1 503597..504550(-) (ceuB) [Haemophilus parainfluenzae strain M27794]
ATGATTAAGCGACGTTATCTGATTTTTCTTTTGATCGTGCTTTCCTTTGTTTCACTTTTTCTCGGGGTAAGTACTATTAA
TTTGCAAGGGTTACTGAATTTTGAAGGTAATCAATGGCAGATATTTTTTATCAGTCGAGTGCCTCGTTTAATCAGTATCT
TGATTGCGGGGGCATCCTTAAGTATTTGTGGCTTAGTGATGCAGCAACTCAGTCGAAACCGATTTGTTTCTCCCACCACT
GCGGGCACCATGGATAGTGCAAGATTAGGGATTTTAATGGCGATGCTGTTTTTCCCAACAGCGTCAATGTTGTTAAAAAC
GACCATTGCGGTGATTGTGTCTTTCCTTGGCACATTGTTATTTATGACGATTCTGTCCCGTTTGAAATTCAAGGACACCA
TTTTTGTACCTTTAGTGGGGATTATGTTTGGTAATATTATCAGTTCGATTACCGCCTTTATTGCTTACAAAGAAGATTTA
TTGCAAAACTTATCCGGGTGGTTACAAGGGGACTTTTCTCTTGTGATGTCAGGCCGTTATGAATTGTTGTATTTCAGTAT
TCCTACACTCATCGTGGCTTATTTATTTACGCATCGTTTTTCTATTGTCGGGATGGGGAAAGATTTTGCGGTTAATCTAG
GTCTAAATTACAACCAGGTCCTTTATCTCGGTCTGCTCATTGTGGCGGTGGTGTCTTCGATTATTATCGTGTCTGCTGGG
GTGATCCCTTTCTTAGGGTTAATTATTCCGAATATCGTCACACTTTATTTAGGGGATAACTTGAAGAAAGTGTTATCTCA
TACAGCCTTACTAGGTGCCGTCTTTGTCTTATTCTGCGATATTTTAGGTCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTGGTTGGCGTATTTGGCAGTGGTATCTTCTTATTTTTATTATTAAAACGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.34

97.476

0.539

Multiple sequence alignment