Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   DXX82_RS00800 Genome accession   NZ_CP031477
Coordinates   187232..189634 (-) Length   800 a.a.
NCBI ID   WP_115910930.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 182232..194634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS00780 kdsB 183434..184192 (-) 759 WP_049380207.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DXX82_RS00785 - 184202..184381 (-) 180 WP_049372406.1 Trm112 family protein -
  DXX82_RS00790 lpxK 184399..185379 (-) 981 WP_049380206.1 tetraacyldisaccharide 4'-kinase -
  DXX82_RS00795 msbA 185433..187181 (-) 1749 WP_115910928.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  DXX82_RS00800 rec2 187232..189634 (-) 2403 WP_115910930.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DXX82_RS00805 dksA 189895..190332 (+) 438 WP_005696429.1 RNA polymerase-binding protein DksA -
  DXX82_RS00810 pcnB 190667..191926 (+) 1260 WP_346009210.1 polynucleotide adenylyltransferase PcnB -
  DXX82_RS00815 folK 191926..192429 (+) 504 WP_115910934.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  DXX82_RS00820 dcuC 192484..193842 (-) 1359 WP_115910937.1 anaerobic C4-dicarboxylate transporter DcuC -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 90054.52 Da        Isoelectric Point: 9.3748

>NTDB_id=307118 DXX82_RS00800 WP_115910930.1 187232..189634(-) (rec2) [Haemophilus parainfluenzae strain M27794]
MKITLFQLCMMFIVSALSLLVVPDFLLFTWQRAGLGILLLVMTTLCSHWFNYFKARNFCMSGILFLLTLAYAHSPALSLL
GQAEKISSLPNKITLDLYISEILHQQDYQTLVAKTSLFDGKEQQIFINWKAPEKPQVGEIWRADVKLRPISARLNHGGFD
RQQWYFSKRIIAVGNVKSAVKMSEDFSYRTHFLQTSLNQTEGLSLQGLLIALAFGERAWLDNKTWLIYQQTNTAHLIAIS
GLHIGLAMGIGFFFARFLQLALPTRFISPWFPLCFGVLIALGYAYLAGFSLPTFRAMMALLFIAILQFSRRYYTPSKMLC
LVVAFLLFCDPLMPLSVSFWLSVGAVTCLIVWYRYVPLSIIEWQHQKLSRKVRWILGLFHLQLGLLILFTPIQLFFFNGM
ALNGFLANLITVPLYSFLLVPLILFAVLTNGAFSSWHFSNAIAQGITQCLSFFQGSYMPISINLSLILTALLSLVFGSML
CGLYFSSQAQTKNTPLKLSQFFTLNNTKILSPEEYKRALWGVILVFSVCISTLGYRYFTKPKWQLDTLDVGQGLATLIVK
EGKGVLYDTGPAWQSGIGGASMAELEILPYLQREGIELETLILSHDDNDHSGGAKAILAAYPDIKLITPSRKNYGETYRT
FCLQGKQWQWRGLDFKVLSPAQITDRAENPQSCVILLTDGQYQILLTGDADVATERSFAEKAGKINVLQVGHHGSKTSTG
EFLLGQIKPDMALISSGRWNAWNFPHPTVIERLNRYQSAVENTAISGHIRLNFTEKGIEIEKARGDFSPWFARVIGLSPK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=307118 DXX82_RS00800 WP_115910930.1 187232..189634(-) (rec2) [Haemophilus parainfluenzae strain M27794]
ATGAAAATCACGCTATTTCAACTGTGCATGATGTTTATTGTTTCAGCCTTATCCTTGCTTGTAGTACCTGATTTTTTACT
GTTTACCTGGCAACGAGCAGGGCTGGGCATTTTATTGCTGGTTATGACCACACTTTGTTCCCATTGGTTCAATTATTTTA
AAGCTAGAAATTTTTGCATGAGCGGTATCTTGTTTTTGCTTACTTTGGCTTATGCGCATTCACCTGCTTTATCGTTATTG
GGACAAGCAGAGAAAATTTCAAGTTTACCAAATAAAATCACCTTAGATCTTTATATCTCAGAAATTCTTCATCAACAAGA
TTATCAAACGTTGGTTGCAAAAACGTCATTATTTGATGGGAAAGAACAACAGATTTTTATTAATTGGAAAGCGCCGGAAA
AGCCACAAGTAGGTGAAATTTGGCGGGCTGATGTAAAACTTCGACCTATTTCTGCAAGACTTAATCATGGGGGATTTGAT
CGACAGCAATGGTATTTTTCCAAAAGGATTATTGCCGTTGGAAATGTGAAAAGTGCGGTCAAAATGAGCGAAGATTTTTC
TTACCGCACACATTTTCTACAGACTAGCCTCAATCAGACAGAGGGGCTTTCTTTGCAAGGCTTGCTTATTGCATTGGCAT
TTGGTGAGCGGGCTTGGTTAGATAATAAAACATGGCTGATTTACCAACAAACGAATACGGCACATTTGATTGCCATTTCA
GGGCTCCATATTGGTTTAGCAATGGGAATAGGCTTTTTCTTTGCTCGATTCTTGCAACTCGCACTGCCTACACGCTTTAT
TTCACCCTGGTTTCCACTTTGCTTTGGTGTGTTGATTGCTTTAGGTTATGCCTATTTAGCCGGATTTAGTTTACCGACCT
TCCGTGCAATGATGGCATTGCTTTTTATTGCAATCCTTCAATTTTCGCGACGATATTACACGCCTTCGAAAATGCTTTGT
TTGGTCGTGGCATTTCTGCTTTTTTGTGATCCACTTATGCCACTTTCGGTTAGCTTTTGGCTTTCAGTTGGTGCTGTTAC
CTGCCTGATTGTATGGTACCGATATGTTCCCTTATCAATAATCGAGTGGCAACATCAAAAATTATCCCGCAAAGTGCGGT
GGATTTTGGGCTTGTTTCATTTGCAGTTAGGGTTGCTGATTTTATTCACGCCTATTCAGCTTTTCTTTTTTAATGGGATG
GCGTTAAATGGATTCTTGGCGAATTTAATTACGGTGCCCTTGTATAGTTTCTTACTTGTGCCATTGATTCTCTTTGCGGT
GTTAACGAATGGCGCATTTTCTTCTTGGCATTTTTCAAATGCGATTGCTCAAGGTATTACACAATGCCTCAGTTTTTTCC
AAGGCTCGTATATGCCGATTTCGATTAATTTATCCCTCATTCTGACCGCACTTTTAAGCCTTGTTTTTGGCAGCATGTTA
TGTGGATTGTATTTTTCATCTCAAGCTCAAACAAAAAATACACCATTAAAATTAAGTCAATTTTTCACATTAAATAACAC
AAAAATCTTATCACCAGAAGAGTATAAACGAGCTCTTTGGGGCGTAATTCTTGTTTTTAGTGTTTGTATTAGCACGCTTG
GGTATCGATATTTTACGAAACCCAAATGGCAGTTAGATACGTTAGATGTTGGACAAGGTTTAGCAACCTTAATTGTGAAA
GAGGGGAAAGGCGTGTTGTATGACACAGGACCCGCATGGCAGAGTGGGATAGGTGGCGCTTCTATGGCGGAATTAGAAAT
ATTACCTTATCTTCAACGGGAAGGGATTGAACTTGAAACCTTGATTTTAAGCCATGATGATAATGACCATTCAGGCGGCG
CGAAAGCGATTTTAGCTGCGTACCCAGATATAAAGTTGATCACACCTTCTCGCAAAAACTATGGTGAAACGTACCGCACT
TTTTGTCTTCAGGGTAAACAATGGCAATGGCGAGGACTTGATTTTAAAGTTCTTTCACCTGCACAAATTACAGACAGGGC
GGAAAATCCGCAATCTTGCGTAATTTTACTAACGGATGGGCAGTATCAGATCCTTTTAACTGGTGATGCTGATGTGGCAA
CAGAAAGATCTTTTGCTGAAAAAGCAGGCAAGATTAACGTGTTACAGGTGGGGCATCATGGTAGTAAAACTTCAACAGGC
GAGTTTTTACTGGGACAGATAAAACCGGATATGGCCTTAATTTCAAGTGGACGATGGAATGCGTGGAATTTTCCTCATCC
AACCGTGATTGAACGGTTAAATCGTTATCAAAGTGCGGTCGAAAATACCGCTATTTCAGGTCATATAAGGTTAAATTTTA
CTGAAAAGGGCATTGAAATTGAAAAGGCGAGAGGAGATTTTTCACCTTGGTTTGCCCGTGTAATTGGATTATCCCCGAAA
TAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(212-476)

Domain of unknown function (DUF4131) (DUF4131)

(35-179)

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-730)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

59.701

100

0.6

Multiple sequence alignment