Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EYC28_RS03520 Genome accession   NZ_CP036380
Coordinates   757917..758810 (+) Length   297 a.a.
NCBI ID   WP_000481614.1    Uniprot ID   -
Organism   Helicobacter pylori strain 125C7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 752917..763810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC28_RS03500 - 753778..755094 (+) 1317 WP_262974775.1 MATE family efflux transporter -
  EYC28_RS03505 rny 755095..756606 (-) 1512 WP_025446973.1 ribonuclease Y -
  EYC28_RS03510 - 756584..757255 (-) 672 WP_080020173.1 5-formyltetrahydrofolate cyclo-ligase -
  EYC28_RS03515 - 757353..757910 (+) 558 WP_001220469.1 hypothetical protein -
  EYC28_RS03520 pilA 757917..758810 (+) 894 WP_000481614.1 signal recognition particle-docking protein FtsY Machinery gene
  EYC28_RS03525 - 758820..759131 (-) 312 WP_000678784.1 YkgJ family cysteine cluster protein -
  EYC28_RS03530 - 759189..760241 (-) 1053 Protein_686 glycine zipper family protein -
  EYC28_RS03535 - 760252..761053 (-) 802 Protein_687 hypothetical protein -
  EYC28_RS03540 moaA 761342..762301 (-) 960 WP_033587414.1 GTP 3',8-cyclase MoaA -
  EYC28_RS03545 mobA 762387..762993 (+) 607 Protein_689 molybdenum cofactor guanylyltransferase MobA -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 33029.24 Da        Isoelectric Point: 7.4170

>NTDB_id=307115 EYC28_RS03520 WP_000481614.1 757917..758810(+) (pilA) [Helicobacter pylori strain 125C7]
MFNFFKKIVNKIKGEEVKEETKEKKRQSVPKEELEEILIGFDIQYDLIESLLNHLGDSITPKQLEVALLRFVRGESYYDK
TRLKTITTKPLVHLIVGVNGAGKTTTIAKLAKLSLKQHKKALLGAGDTFRAAAVKQLQLWGEKLNIQVISAKEGSDPSSL
AYNTIESAIAKNIDEVFIDTAGRLHNQTNLKNELSKIARTCSKALKNAPFYKFLILDGTQGSSGLTQAKIFHETLALDGV
IMTKLDGTSKGGAILSVLYELKLPILYLGMGEKEDDLIAFDEERFIEDLVDAVFVEQ

Nucleotide


Download         Length: 894 bp        

>NTDB_id=307115 EYC28_RS03520 WP_000481614.1 757917..758810(+) (pilA) [Helicobacter pylori strain 125C7]
ATGTTTAATTTTTTCAAAAAAATTGTCAATAAAATTAAGGGTGAAGAGGTTAAAGAAGAGACTAAAGAAAAAAAGCGCCA
AAGCGTTCCTAAAGAGGAATTAGAAGAAATTTTGATTGGCTTTGATATTCAATACGATTTGATAGAAAGCTTGCTAAATC
ATTTAGGCGATTCAATCACGCCCAAGCAATTAGAAGTCGCTTTGTTGCGTTTCGTGCGTGGGGAAAGCTATTACGATAAA
ACACGCCTAAAAACCATCACCACAAAACCCTTAGTGCATCTCATCGTGGGGGTTAATGGGGCGGGCAAAACCACCACGAT
CGCCAAACTCGCCAAGCTCTCTTTAAAACAACATAAAAAAGCGCTTTTAGGGGCGGGCGATACCTTTAGAGCGGCCGCAG
TCAAACAGCTCCAGTTGTGGGGCGAAAAGCTTAACATTCAAGTCATTAGCGCTAAAGAAGGGAGCGATCCAAGCTCTCTA
GCTTATAACACCATAGAAAGCGCGATCGCTAAAAATATAGATGAAGTTTTTATAGACACCGCCGGGAGGTTACACAACCA
GACCAACCTTAAAAACGAGCTTTCTAAAATCGCACGCACCTGCTCTAAAGCCTTAAAAAACGCCCCCTTTTATAAATTCC
TTATTTTAGATGGCACGCAAGGGAGTTCTGGGCTCACTCAAGCCAAGATTTTCCATGAAACTTTGGCGTTAGACGGCGTG
ATTATGACTAAGCTTGATGGCACTTCTAAAGGCGGAGCGATTTTAAGCGTGCTGTATGAGTTGAAATTACCCATTCTTTA
TTTAGGAATGGGCGAAAAAGAAGACGATTTGATCGCTTTTGATGAAGAACGCTTTATAGAAGACTTGGTTGATGCGGTGT
TTGTGGAACAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(91-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.824

89.899

0.367