Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   DVV14_RS16995 Genome accession   NZ_CP031473
Coordinates   139132..140229 (+) Length   365 a.a.
NCBI ID   WP_019275431.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain RE22     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 134132..145229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVV14_RS16965 (DVV14_17055) - 135517..135768 (-) 252 WP_064487009.1 YgjV family protein -
  DVV14_RS16970 (DVV14_17060) - 136063..136383 (-) 321 WP_006961083.1 DUF496 family protein -
  DVV14_RS16975 (DVV14_17065) - 136577..136771 (+) 195 WP_064486358.1 hypothetical protein -
  DVV14_RS16980 (DVV14_17070) - 136801..137460 (+) 660 WP_040121669.1 YceH family protein -
  DVV14_RS16985 (DVV14_17075) - 137460..137777 (+) 318 WP_038161424.1 GIY-YIG nuclease family protein -
  DVV14_RS16990 (DVV14_17080) traF 137844..138983 (+) 1140 WP_064487008.1 conjugal transfer protein TraF -
  DVV14_RS16995 (DVV14_17085) luxP 139132..140229 (+) 1098 WP_019275431.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  DVV14_RS17000 (DVV14_17090) luxQ 140229..142799 (+) 2571 WP_064486357.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  DVV14_RS17005 (DVV14_17095) - 142785..143450 (-) 666 WP_040121665.1 PilZ domain-containing protein -
  DVV14_RS17010 (DVV14_17100) glpD 143557..145089 (-) 1533 WP_038161412.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41247.46 Da        Isoelectric Point: 5.6651

>NTDB_id=307073 DVV14_RS16995 WP_019275431.1 139132..140229(+) (luxP) [Vibrio coralliilyticus strain RE22]
MFKATLLSLAVAVSATSQAHTTQVLNGYWQYDEYLDSHPVQKQLTDALSETVRNYPTPISAKQDKPVSIAVVYPGQQISD
YWVRNIKAFETRLEKLGISYKINQVFTRPNLDVRQQSLSLLEAVQNKADYLIFTLDTTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWDDQQPFMYVGFDHIKGARILEQYYKDTIPKESRYSVLYFSEGYVSDARGDTFIEEMSHHDSYKLSSSYYTTAT
RESGFNAAVKAIEKDPSISFIYACSTDVALGAVEALKSMKREDILINGWGGGSAELEAISKGDLDVTAMRMNDDTGIAMA
EAIKWDLEGKDVPHVYSGDFEIVTKADSPSKVEKLKQRAFRYSDQ

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=307073 DVV14_RS16995 WP_019275431.1 139132..140229(+) (luxP) [Vibrio coralliilyticus strain RE22]
ATGTTTAAAGCAACGCTGTTATCATTGGCGGTCGCTGTATCAGCGACAAGTCAGGCACACACTACACAAGTCCTCAATGG
TTACTGGCAATACGACGAATATCTCGATTCCCATCCCGTACAGAAGCAGTTAACGGATGCGTTGTCTGAAACAGTAAGAA
ATTACCCAACTCCAATTTCGGCGAAGCAAGATAAGCCAGTTTCTATTGCTGTGGTTTATCCTGGGCAGCAGATTTCGGAC
TATTGGGTTCGCAATATCAAAGCTTTTGAAACTCGTTTAGAAAAGTTAGGAATCAGCTACAAGATAAACCAAGTTTTTAC
TCGGCCGAATCTCGATGTCAGACAACAAAGTCTTTCGTTGCTTGAAGCGGTTCAAAATAAAGCTGACTACTTGATATTCA
CGCTTGACACGACTCGTCACCGCAAATTTATTGAACATGTTTTGAGTTCAACCGATACCAAGCTCATTCTGCAAAACATT
ACGACCCCTGTTAGAGCTTGGGACGATCAGCAACCCTTCATGTATGTGGGGTTCGATCACATCAAAGGCGCTCGAATTCT
TGAGCAGTACTACAAAGACACCATCCCTAAAGAAAGCCGTTACTCGGTGCTTTACTTTTCTGAAGGTTACGTCAGTGATG
CTCGTGGTGACACGTTCATTGAAGAGATGAGTCATCATGATTCGTACAAGCTATCTTCATCGTATTACACCACAGCAACT
CGAGAATCTGGGTTTAACGCTGCCGTTAAAGCGATAGAGAAAGACCCTAGTATCTCCTTCATATATGCGTGCTCTACAGA
TGTTGCCTTAGGAGCTGTAGAAGCACTTAAATCGATGAAGAGAGAAGATATTCTTATTAATGGTTGGGGTGGTGGTAGCG
CCGAGTTGGAGGCTATTTCTAAAGGCGATCTAGATGTTACAGCCATGAGAATGAATGATGACACTGGTATTGCTATGGCA
GAAGCTATTAAGTGGGATCTTGAAGGTAAAGATGTACCGCACGTCTACTCTGGTGACTTTGAAATAGTGACCAAAGCGGA
CAGCCCTTCAAAAGTTGAGAAATTAAAGCAGAGAGCGTTTAGGTACTCGGATCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.722

98.63

0.638

Multiple sequence alignment