Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DVV14_RS14235 Genome accession   NZ_CP031472
Coordinates   3046571..3047089 (+) Length   172 a.a.
NCBI ID   WP_064488718.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain RE22     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3041571..3052089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVV14_RS14225 (DVV14_14300) gshA 3044374..3045942 (+) 1569 WP_064489019.1 glutamate--cysteine ligase -
  DVV14_RS14230 (DVV14_14305) - 3045952..3046548 (+) 597 WP_267898298.1 hypothetical protein -
  DVV14_RS14235 (DVV14_14310) luxS 3046571..3047089 (+) 519 WP_064488718.1 S-ribosylhomocysteine lyase Regulator
  DVV14_RS14240 (DVV14_14315) - 3047135..3047611 (-) 477 WP_064488717.1 RDD family protein -
  DVV14_RS14250 (DVV14_14325) - 3048147..3048554 (+) 408 WP_006957092.1 VOC family protein -
  DVV14_RS14255 (DVV14_14330) - 3048673..3049929 (+) 1257 WP_029236357.1 HD-GYP domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19081.86 Da        Isoelectric Point: 4.7134

>NTDB_id=307070 DVV14_RS14235 WP_064488718.1 3046571..3047089(+) (luxS) [Vibrio coralliilyticus strain RE22]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPTEEQVAQSWLSSMQDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIAQTIIDAGIKVNLNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=307070 DVV14_RS14235 WP_064488718.1 3046571..3047089(+) (luxS) [Vibrio coralliilyticus strain RE22]
ATGCCATTATTAGATAGCTTTACTGTGGATCACACTCGCATGAATGCGCCAGCGGTGAGAGTGGCTAAGACAATGACCAC
GCCGAAAGGTGATACCATTACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGACATTCTTTCTGAGAAAGGCATTC
ACACACTGGAACACTTATACGCAGGTTTCATGCGCAGTCACTTAAACGGTGATAGCGTAGAAATTATCGATATTTCTCCA
ATGGGCTGCCGTACTGGTTTTTACATGAGTCTGATTGGCACACCAACAGAAGAGCAGGTAGCTCAGTCTTGGTTGTCATC
GATGCAAGATGTGCTAAAAGTTGAAAGCCAAAACAAGATCCCTGAACTAAACGAATATCAATGTGGCACTGCTGCGATGC
ATTCTCTTGAGGAAGCTAAGCAGATTGCTCAAACCATTATTGACGCAGGCATCAAAGTTAACCTCAATGACGAGTTAGCT
TTACCTGAGTCAATGCTTAAAGAGCTGAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment