Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | DVV14_RS09630 | Genome accession | NZ_CP031472 |
| Coordinates | 2131316..2132299 (-) | Length | 327 a.a. |
| NCBI ID | WP_006958149.1 | Uniprot ID | A0A097AVA5 |
| Organism | Vibrio coralliilyticus strain RE22 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2126316..2137299
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DVV14_RS09605 (DVV14_09660) | rimM | 2126425..2126973 (-) | 549 | WP_031343344.1 | ribosome maturation factor RimM | - |
| DVV14_RS09610 (DVV14_09665) | rpsP | 2127003..2127251 (-) | 249 | WP_005438039.1 | 30S ribosomal protein S16 | - |
| DVV14_RS09615 (DVV14_09670) | ffh | 2127460..2128851 (-) | 1392 | WP_021458280.1 | signal recognition particle protein | - |
| DVV14_RS09620 (DVV14_09675) | - | 2129057..2129851 (+) | 795 | WP_038164050.1 | inner membrane protein YpjD | - |
| DVV14_RS09625 (DVV14_09680) | - | 2129974..2131248 (+) | 1275 | WP_006958148.1 | CNNM domain-containing protein | - |
| DVV14_RS09630 (DVV14_09685) | rpoS | 2131316..2132299 (-) | 984 | WP_006958149.1 | RNA polymerase sigma factor RpoS | Regulator |
| DVV14_RS09635 (DVV14_09690) | nlpD | 2132366..2133277 (-) | 912 | WP_021456683.1 | murein hydrolase activator NlpD | - |
| DVV14_RS09640 (DVV14_09695) | - | 2133280..2133906 (-) | 627 | WP_038164045.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| DVV14_RS09645 (DVV14_09700) | surE | 2133909..2134652 (-) | 744 | WP_172845461.1 | 5'/3'-nucleotidase SurE | - |
| DVV14_RS09650 (DVV14_09705) | truD | 2134664..2135710 (-) | 1047 | WP_064488047.1 | tRNA pseudouridine(13) synthase TruD | - |
| DVV14_RS09655 (DVV14_09710) | ispF | 2135757..2136236 (-) | 480 | WP_019277514.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| DVV14_RS09660 (DVV14_09715) | ispD | 2136240..2136944 (-) | 705 | WP_064488048.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| DVV14_RS09665 (DVV14_09720) | ftsB | 2136947..2137225 (-) | 279 | WP_019277512.1 | cell division protein FtsB | - |
Sequence
Protein
Download Length: 327 a.a. Molecular weight: 37396.39 Da Isoelectric Point: 4.7232
>NTDB_id=307052 DVV14_RS09630 WP_006958149.1 2131316..2132299(-) (rpoS) [Vibrio coralliilyticus strain RE22]
MSISNTATKVEEFELEPTMESIQANGLTTANRTQAEDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMES
LFSMNEE
MSISNTATKVEEFELEPTMESIQANGLTTANRTQAEDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMES
LFSMNEE
Nucleotide
Download Length: 984 bp
>NTDB_id=307052 DVV14_RS09630 WP_006958149.1 2131316..2132299(-) (rpoS) [Vibrio coralliilyticus strain RE22]
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAGTTCGAGCTTGAACCAACAATGGAATCGATTCAGGCAAACGGGCT
TACTACCGCCAACCGCACCCAAGCAGAGGACGCCAAAGAGGAGTTTGACGCTTCCACAAAAAGCTTGGATGCCACTCAAC
TTTACTTGGGAGAAATTGGTTTCTCTCCACTACTCACCGCAGAAGAAGAAGTTTTGTACGCTCGCCGTGCCCTAAGAGGT
GACGAAGCTGCGCGTAAACGAATGATTGAAAGTAATCTTCGCTTAGTAGTGAAAATTTCCCGTCGATACAGCAACCGTGG
GCTTGCTCTGCTTGATTTGATTGAAGAAGGCAACTTGGGCTTGATTCGCGCGGTTGAAAAGTTTGACCCAGAGAGAGGAT
TCCGATTCTCGACCTATGCTACTTGGTGGATCCGCCAAACGATTGAACGTGCTTTGATGAATCAAACTCGCACCATACGT
TTGCCTATCCATGTGGTCAAAGAACTGAACATCTATCTGCGTACTGCTCGTGAGTTATCACAGAAGCTAGACCATGAACC
AACGGCAGAAGAGATTGCTACACAACTCGACAAGCCAGTCGACGATGTCAGCAAGATGCTACGCCTCAATGAACGAATTA
GTTCTGTAGACACCCCTATCGGTGGTGATGGTGAAAAAGCACTACTGGATATTATTCCTGATGTGAACAACTCTGACCCT
GAAGTATCCACACAAGACGATGATATCAAATCTTCATTGATCCATTGGTTGGATGAATTGAATCCTAAGCAAAAAGAAGT
CTTAGCACGTCGTTTTGGATTATTGGGCTACGAGCCGTCAACACTGGAAGAAGTAGGACGTGAAATTAACCTAACTCGTG
AACGTGTTCGTCAGATTCAGGTTGAAGGCCTACGCCGTTTAAGAGAGATCCTGATCAAACAAGGTCTGAACATGGAAAGC
CTGTTCAGCATGAACGAAGAGTGA
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAGTTCGAGCTTGAACCAACAATGGAATCGATTCAGGCAAACGGGCT
TACTACCGCCAACCGCACCCAAGCAGAGGACGCCAAAGAGGAGTTTGACGCTTCCACAAAAAGCTTGGATGCCACTCAAC
TTTACTTGGGAGAAATTGGTTTCTCTCCACTACTCACCGCAGAAGAAGAAGTTTTGTACGCTCGCCGTGCCCTAAGAGGT
GACGAAGCTGCGCGTAAACGAATGATTGAAAGTAATCTTCGCTTAGTAGTGAAAATTTCCCGTCGATACAGCAACCGTGG
GCTTGCTCTGCTTGATTTGATTGAAGAAGGCAACTTGGGCTTGATTCGCGCGGTTGAAAAGTTTGACCCAGAGAGAGGAT
TCCGATTCTCGACCTATGCTACTTGGTGGATCCGCCAAACGATTGAACGTGCTTTGATGAATCAAACTCGCACCATACGT
TTGCCTATCCATGTGGTCAAAGAACTGAACATCTATCTGCGTACTGCTCGTGAGTTATCACAGAAGCTAGACCATGAACC
AACGGCAGAAGAGATTGCTACACAACTCGACAAGCCAGTCGACGATGTCAGCAAGATGCTACGCCTCAATGAACGAATTA
GTTCTGTAGACACCCCTATCGGTGGTGATGGTGAAAAAGCACTACTGGATATTATTCCTGATGTGAACAACTCTGACCCT
GAAGTATCCACACAAGACGATGATATCAAATCTTCATTGATCCATTGGTTGGATGAATTGAATCCTAAGCAAAAAGAAGT
CTTAGCACGTCGTTTTGGATTATTGGGCTACGAGCCGTCAACACTGGAAGAAGTAGGACGTGAAATTAACCTAACTCGTG
AACGTGTTCGTCAGATTCAGGTTGAAGGCCTACGCCGTTTAAGAGAGATCCTGATCAAACAAGGTCTGAACATGGAAAGC
CTGTTCAGCATGAACGAAGAGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
83.988 |
100 |
0.85 |