Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   DVV14_RS04245 Genome accession   NZ_CP031472
Coordinates   960683..962170 (+) Length   495 a.a.
NCBI ID   WP_064487446.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain RE22     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 955683..967170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVV14_RS04230 (DVV14_04280) - 956833..957528 (+) 696 WP_064487443.1 chromosome partitioning protein ParA -
  DVV14_RS04235 (DVV14_04285) - 957538..958338 (+) 801 WP_064487444.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  DVV14_RS04240 (DVV14_04290) - 958361..960661 (+) 2301 WP_064487445.1 response regulator -
  DVV14_RS04245 (DVV14_04295) luxO 960683..962170 (+) 1488 WP_064487446.1 sigma-54 dependent transcriptional regulator Regulator
  DVV14_RS04250 (DVV14_04300) - 962148..963215 (+) 1068 WP_064487447.1 glycosyltransferase family 4 protein -
  DVV14_RS04255 (DVV14_04305) - 963315..964517 (+) 1203 WP_064487448.1 glycosyltransferase -
  DVV14_RS04260 (DVV14_04310) - 964510..965706 (+) 1197 WP_064487449.1 glycosyltransferase -
  DVV14_RS04265 (DVV14_04315) - 965717..967168 (+) 1452 WP_064487450.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55148.95 Da        Isoelectric Point: 5.5266

>NTDB_id=307043 DVV14_RS04245 WP_064487446.1 960683..962170(+) (luxO) [Vibrio coralliilyticus strain RE22]
MRAKVLLIEDSTSLAVLYKQYVKDEAFDLFHVETGRDAKAFIERNVPQLVILDLKLPDMNGEDILDWINENQVPTSVVVA
TAHGSVDIAVSLLQKGAKDFLEKPIQADRLKTSINLHLQQAKLEHLVEDIEAKFDRNRFHGFIGSCLPMQGVYKIIDSVA
PTTASVFIIGESGTGKEVCAEAIHKESKRNDKPFIAINCGAIPKDLMESEIFGHVKGAFTGATTDRKGAASLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGSKEMKVDVRIICATNRDPLLEVEEGRFREDLYYRVHVVPIEMPPLRERGNDI
TTLATHFLKLFAKEDGKKFNGINRDAESLLKHYSWPGNVRQLQNVIRNIVVLNDESKLSVAHLPDQISKSNKSTKPRAAQ
AAIRYEAPAQASPVEAVDTAIQASTPVVESVNTQSSTPVTIRPMWQVERETIQQAIDFCDGNVLNAAVLLELSPSTVYRK
KQAWEAEEDEQQYAD

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=307043 DVV14_RS04245 WP_064487446.1 960683..962170(+) (luxO) [Vibrio coralliilyticus strain RE22]
ATGAGAGCAAAAGTACTATTGATTGAAGACTCCACATCTCTGGCAGTCCTTTACAAACAGTACGTAAAAGATGAAGCGTT
TGACCTGTTTCATGTTGAAACAGGTCGTGATGCCAAAGCATTCATAGAACGAAACGTACCACAACTTGTGATTTTAGATC
TCAAGCTTCCGGACATGAACGGCGAAGATATCCTGGACTGGATCAACGAGAATCAAGTACCAACCTCCGTCGTCGTTGCA
ACCGCACACGGTTCTGTGGATATCGCGGTAAGCTTGCTCCAGAAAGGGGCTAAAGACTTTCTCGAAAAGCCGATTCAGGC
AGACCGACTCAAAACGTCGATAAATCTCCACTTACAGCAAGCTAAACTCGAACACTTAGTCGAAGATATCGAAGCGAAAT
TCGACAGAAATCGCTTCCATGGATTCATCGGCTCTTGTCTACCTATGCAGGGCGTATACAAAATCATCGACTCTGTTGCA
CCAACAACAGCGAGTGTCTTCATCATTGGAGAAAGCGGCACCGGTAAAGAAGTGTGCGCAGAAGCAATTCACAAAGAAAG
TAAACGAAACGATAAACCTTTTATCGCCATCAACTGTGGTGCTATTCCTAAAGATCTTATGGAAAGCGAAATTTTTGGCC
ATGTAAAAGGTGCATTCACAGGAGCGACTACGGACAGAAAAGGCGCGGCATCATTAGCTCATGGAGGAACGCTCTTCCTT
GATGAGCTATGCGAGATGGAGCTGGAAATGCAGAAGAAACTGCTACGTTTCCTGCAGACAGGTACTTTCACCCCACTCGG
GGGTTCGAAAGAAATGAAGGTCGATGTACGGATAATCTGCGCCACCAACCGTGACCCATTGCTAGAAGTTGAAGAAGGCC
GATTCCGAGAAGACTTGTACTACCGTGTTCATGTTGTGCCGATTGAGATGCCTCCTTTGAGAGAGCGTGGGAATGACATC
ACAACGCTAGCGACTCATTTCCTTAAGCTGTTCGCTAAAGAAGACGGTAAGAAGTTCAATGGTATCAACCGAGACGCTGA
ATCTTTGCTCAAGCACTACTCCTGGCCCGGTAATGTGAGACAGCTGCAAAATGTCATTCGCAATATAGTTGTTCTCAACG
ACGAATCAAAGCTCTCAGTCGCTCACCTGCCTGATCAGATTTCAAAAAGTAATAAATCGACTAAGCCCAGAGCAGCCCAA
GCAGCAATCCGCTATGAAGCTCCTGCTCAAGCATCACCAGTAGAAGCGGTGGATACGGCAATACAAGCATCAACTCCAGT
GGTTGAGAGTGTTAACACACAAAGTTCTACGCCGGTAACAATACGGCCAATGTGGCAGGTAGAGAGAGAAACCATTCAGC
AAGCCATTGATTTTTGCGATGGTAATGTCCTCAACGCAGCGGTATTACTCGAGTTGAGTCCATCAACCGTTTATCGTAAA
AAACAGGCTTGGGAAGCCGAAGAAGATGAGCAGCAATACGCGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(444-480)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.48

97.172

0.481

Multiple sequence alignment