Detailed information NTG0307042

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: DVV14_RS02825
• Genome accession: NZ_CP031472
• Coordinates: 632229..633653 (-)
• Length: 474 a.a.
• NCBI ID: WP_064487271.1
• Uniprot ID: -
• Organism: Vibrio coralliilyticus strain RE22
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 627229..638653

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DVV14_RS02805 (DVV14_02855)	-	628646..629848 (+)	1203	WP_064487269.1	HD-GYP domain-containing protein	-
DVV14_RS02810 (DVV14_02860)	cdd	629901..630788 (-)	888	WP_043007793.1	cytidine deaminase	-
DVV14_RS02815 (DVV14_02865)	-	631042..631719 (-)	678	WP_064487270.1	CidB/LrgB family autolysis modulator	-
DVV14_RS02820 (DVV14_02870)	-	631719..632084 (-)	366	WP_006962035.1	CidA/LrgA family protein	-
DVV14_RS02825 (DVV14_02875)	sbcB	632229..633653 (-)	1425	WP_064487271.1	exodeoxyribonuclease I	Machinery gene
DVV14_RS02830 (DVV14_02880)	-	633793..635166 (-)	1374	WP_064487272.1	L-cystine transporter	-
DVV14_RS02835 (DVV14_02885)	-	635358..636044 (-)	687	WP_081261479.1	NAD(P)H-binding protein	-
DVV14_RS02840 (DVV14_02890)	-	636569..637180 (+)	612	WP_064487274.1	flavin reductase family protein	-
DVV14_RS02845 (DVV14_02895)	cobT	637187..638215 (+)	1029	WP_064487275.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54643.96 Da
• Isoelectric Point: 5.0914

>NTDB_id=307042 DVV14_RS02825 WP_064487271.1 632229..633653(-) (sbcB) [Vibrio coralliilyticus strain RE22]
MQQAHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQTAASKGLPEP
EFIAKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENEEGFI
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGRECNY
TSWVVPVAWHPTNQNAVIVVDLAKDPQPLLDLDLEQLNERLYTKHSELGPDELPVPIKLVHLNKCPILAPAKTLTAENAA
NIGIDREKCLQNLERLRQHPEIREKLNSLYSIEREYEKSDDVDTMLYDGFFSPAAKKSMDIIRETEAKNLSALDISFSDD
RIAPLLFRYRARHFPWTLDESEQQKWAAHSREYFESRIEDYMLNLENLVHEHESDEKKIAILKSVYQYVQKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=307042 DVV14_RS02825 WP_064487271.1 632229..633653(-) (sbcB) [Vibrio coralliilyticus strain RE22]
ATGCAACAAGCGCATCAACCTACGTTTTTCTTTTTTGATTATGAAACGTGGGGAACCAGCCCAGCAAAAGACAGACCGTC
CCAGTTTGCGGGTGTACGCACCGACATGGATTTCAATATCATCGGTGAGCCTCTTGTTATCTACTGCCAACCGCCTTCAG
ATTATCTTCCATCACCCGAAGCCGCGCTTATCACTGGTATCACACCTCAGACGGCAGCAAGTAAAGGGTTACCTGAGCCG
GAATTTATTGCCAAAATTCATGAGCAGTTGTCCACGCCAAACACCATCAACTTGGGTTACAATAGCATTCGATTTGATGA
CGAAGTGACGCGATATACCTGTTACCGAAATTTCATCGATCCGTATGCGTGGAGCTGGCAAAACGGCAACTCTCGCTGGG
ACTTACTCGATGTCATGCGCGCCTGTCACGCCCTTCGCCCAGAAGGTATTAATTGGCCAGAGAATGAAGAAGGTTTTATC
AGCTTTAAGCTAGAGCACTTATCCGTTGCCAATGGCATTGAGCACGAGAATGCACACGATGCCATGGCTGACGTTATAGC
AACGATTGAAATGGCTAAAAAGGTAAAAGCCGCTCAGCCTAAGCTCTTTGATTATTTCCTTAGCATGCGCCACAAGCGCA
AACTGAACGAACTCGTCGATATCGTGAATATGACACCGCTTATGCACGTATCGGGTATGTTGGGACGCGAATGCAATTAC
ACTAGCTGGGTGGTTCCGGTCGCTTGGCATCCAACCAACCAGAATGCGGTGATCGTGGTCGATTTGGCGAAAGATCCTCA
GCCGTTGTTGGATTTAGATTTAGAACAGCTTAATGAGCGTCTCTACACCAAACATTCTGAACTTGGCCCAGACGAACTGC
CTGTACCAATCAAACTTGTCCATCTCAACAAGTGCCCTATTTTGGCTCCAGCCAAAACATTAACTGCTGAGAATGCAGCT
AACATAGGCATTGACAGAGAAAAATGCTTACAAAACCTTGAGCGACTAAGACAGCACCCTGAGATTAGAGAAAAACTCAA
TTCGCTATACAGTATCGAGAGAGAATACGAAAAGAGCGATGATGTTGATACTATGCTTTACGATGGTTTCTTCTCTCCTG
CAGCCAAGAAATCAATGGATATCATACGAGAAACTGAAGCAAAGAATCTTTCCGCCCTTGATATCTCATTCAGTGACGAC
AGAATTGCTCCGCTTCTATTCCGCTATCGCGCCAGACATTTTCCGTGGACATTGGATGAGAGTGAACAACAAAAATGGGC
AGCACACAGCCGCGAATACTTCGAAAGTCGAATAGAAGACTACATGTTGAATTTGGAAAACTTAGTTCACGAGCATGAGA
GTGACGAAAAAAAGATAGCTATCTTAAAATCTGTTTACCAATACGTTCAAAAGCTAGTATCTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.858	99.789	0.787