Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DSC91_RS18205 Genome accession   NZ_CP031467
Coordinates   509830..511206 (-) Length   458 a.a.
NCBI ID   WP_115780252.1    Uniprot ID   -
Organism   Paraburkholderia caffeinilytica strain CF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 504830..516206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSC91_RS18185 (DSC91_003798) - 505441..505920 (-) 480 WP_115780249.1 glutathione peroxidase -
  DSC91_RS18190 - 506056..507999 (+) 1944 WP_115780250.1 ATP-binding cassette domain-containing protein -
  DSC91_RS18195 - 508145..509236 (+) 1092 WP_229758073.1 CaiB/BaiF CoA-transferase family protein -
  DSC91_RS18200 (DSC91_003801) - 509408..509686 (-) 279 WP_115780251.1 DUF2866 domain-containing protein -
  DSC91_RS18205 radA 509830..511206 (-) 1377 WP_115780252.1 DNA repair protein RadA Machinery gene
  DSC91_RS18210 (DSC91_003803) alr 511437..512507 (-) 1071 WP_115780253.1 alanine racemase -
  DSC91_RS18215 (DSC91_003804) lplT 512726..514033 (+) 1308 WP_115780254.1 lysophospholipid transporter LplT -
  DSC91_RS18220 (DSC91_003805) thiD 514089..514895 (+) 807 WP_115780255.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  DSC91_RS18225 (DSC91_003806) - 515109..516131 (-) 1023 WP_175171774.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48718.04 Da        Isoelectric Point: 7.3833

>NTDB_id=307005 DSC91_RS18205 WP_115780252.1 509830..511206(-) (radA) [Paraburkholderia caffeinilytica strain CF1]
MAKQKTLYICNECGGQSPKWAGQCPSCNAWNTLVESVAETPSTHRFQSLAKSAPVRRLADIEASDVPRFSTGVSEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLAEIAADKRALYISGEESAAQIALRAQRLSLLEPGSKASELQLLAEIQLEKIQ
ATIADQRPDVAVIDSIQTVYSDALTSAPGSVAQVRECAAQLTRIAKQSGTTIIMVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDAANA
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLSVLLAIHSSMRNKPLPKGLVVFGEVGLA
GEIRPSPRGQDRLKEAAKLGFSVAVIPKANAPKQPIEGLQVVAVERIEQAIDRVRTLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=307005 DSC91_RS18205 WP_115780252.1 509830..511206(-) (radA) [Paraburkholderia caffeinilytica strain CF1]
GTGGCTAAACAGAAGACGTTGTACATCTGCAATGAATGTGGCGGCCAATCGCCGAAGTGGGCCGGACAGTGCCCGTCATG
CAATGCGTGGAACACGCTGGTGGAGTCCGTCGCGGAGACACCCTCCACGCATCGCTTCCAGTCGCTCGCGAAAAGTGCGC
CGGTGCGGCGTCTCGCCGACATCGAAGCGTCCGACGTGCCGCGTTTTTCGACCGGCGTCAGCGAATTCGACCGCGTGCTC
GGCGGCGGTCTCGTGCCGGGCGGCGTGGTGCTGATCGGCGGCGATCCGGGCATCGGCAAATCGACGCTGCTGCTGCAGTC
GCTCGCGGAAATTGCCGCGGACAAACGCGCGCTTTATATCAGCGGCGAAGAATCGGCCGCGCAGATTGCGTTGCGCGCAC
AACGACTTTCGTTGCTGGAACCCGGCTCGAAGGCCAGCGAGCTGCAACTGCTGGCGGAAATCCAGCTCGAGAAAATTCAG
GCGACCATTGCCGATCAGCGGCCGGACGTCGCGGTGATCGACTCGATTCAAACCGTTTATTCCGACGCGCTGACCTCGGC
GCCGGGTTCGGTCGCGCAGGTCCGCGAGTGCGCGGCGCAATTGACGCGCATCGCCAAACAGTCGGGCACCACGATCATCA
TGGTCGGCCACGTGACCAAGGAAGGCGCGCTCGCCGGACCGCGCGTGCTCGAGCACATCGTCGACACCGTGCTGTACTTC
GAGGGCGACACGCATTCGTCGTACCGCCTGGTGCGCGCGATCAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAACGTGGTTTGCGCGGCGTCGCCAATCCGTCGGCGCTGTTTCTGTCGCAGCACGAGCAATCCGTGCCGG
GGTCGTGCGTGCTGGTGACGCAGGAAGGCACGCGGCCGCTGCTGGTCGAAGTGCAGGCGTTGGTGGATGCAGCCAACGCG
CCCAATCCGCGGCGCCTTGCGGTGGGGCTGGAGCAGAACCGGCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGCCGG
CATTGCCTGTTTCGACCAGGACGTGTTCCTGAACGCGGTGGGCGGCGTGAAGATCACTGAGCCCGCTGCCGATCTCTCCG
TGCTGCTCGCGATCCATTCTTCGATGCGCAACAAGCCGCTGCCCAAGGGGCTCGTCGTATTCGGCGAAGTGGGCCTTGCC
GGCGAAATCCGGCCGTCGCCGCGCGGTCAGGATCGTCTCAAGGAAGCGGCCAAGCTGGGCTTTTCGGTCGCGGTCATTCC
GAAGGCCAATGCCCCGAAACAACCGATTGAAGGCTTACAAGTTGTTGCGGTGGAACGGATCGAACAGGCTATCGATCGGG
TCCGCACGCTTGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.241

100

0.496
  radA Streptococcus pneumoniae Rx1

47.072

100

0.474
  radA Streptococcus pneumoniae D39

47.072

100

0.474
  radA Streptococcus pneumoniae R6

47.072

100

0.474
  radA Streptococcus pneumoniae TIGR4

47.072

100

0.474
  radA Streptococcus mitis SK321

47.38

100

0.474
  radA Streptococcus mitis NCTC 12261

47.046

99.782

0.469

Multiple sequence alignment