Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | S65EC_RS26120 | Genome accession | NZ_CP036245 |
| Coordinates | 5051679..5052155 (+) | Length | 158 a.a. |
| NCBI ID | WP_001186775.1 | Uniprot ID | A7ZVJ5 |
| Organism | Escherichia coli strain S65EC | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 5046679..5057155
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| S65EC_RS26090 (S65EC_04820) | cah | 5046800..5049646 (+) | 2847 | WP_021526504.1 | calcium-binding autotransporter Cah | - |
| S65EC_RS26095 (S65EC_04821) | - | 5049717..5049912 (+) | 196 | Protein_4843 | DUF905 family protein | - |
| S65EC_RS26105 (S65EC_04822) | - | 5050030..5050848 (+) | 819 | WP_001234738.1 | DUF932 domain-containing protein | - |
| S65EC_RS26115 (S65EC_04823) | - | 5051190..5051663 (+) | 474 | WP_001350782.1 | antirestriction protein | - |
| S65EC_RS26120 (S65EC_04824) | radC | 5051679..5052155 (+) | 477 | WP_001186775.1 | RadC family protein | Machinery gene |
| S65EC_RS26125 (S65EC_04825) | - | 5052218..5052439 (+) | 222 | WP_000692345.1 | DUF987 domain-containing protein | - |
| S65EC_RS26130 (S65EC_04827) | - | 5052602..5052970 (+) | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| S65EC_RS26135 (S65EC_04828) | - | 5053060..5053437 (+) | 378 | WP_000854759.1 | TA system toxin CbtA family protein | - |
| S65EC_RS26140 (S65EC_04829) | - | 5053434..5053922 (+) | 489 | WP_000761690.1 | DUF5983 family protein | - |
| S65EC_RS26145 (S65EC_04830) | - | 5053939..5054115 (+) | 177 | WP_000839286.1 | DUF957 domain-containing protein | - |
| S65EC_RS26960 (S65EC_04831) | - | 5054221..5054370 (+) | 150 | Protein_4852 | hypothetical protein | - |
| S65EC_RS27735 | - | 5054340..5054474 (+) | 135 | Protein_4853 | transcriptional regulator | - |
| S65EC_RS27600 (S65EC_04832) | - | 5054737..5055042 (+) | 306 | Protein_4854 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17687.30 Da Isoelectric Point: 7.1437
>NTDB_id=306955 S65EC_RS26120 WP_001186775.1 5051679..5052155(+) (radC) [Escherichia coli strain S65EC]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=306955 S65EC_RS26120 WP_001186775.1 5051679..5052155(+) (radC) [Escherichia coli strain S65EC]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |